Query= MSMg01no149_n04.b1 MSMg01no149_n04.b1 CHROMAT_FILE:
MSMg01no149_n04.b1 PHD_FILE: MSMg01no149_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:13 2005
(554 letters)
>mm_chr17_5159959_5160911
Length = 953
Score = 1009 bits (522), Expect = 0.0
Identities = 546/554 (98%), Gaps = 1/554 (0%)
Strand = Plus / Minus
Query: 1 gatctgaataaattttccaccagaggacatccacagcaccctatgcttacactacccagt 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 753 gatctgaataaattttccaccagaagacatccacagcaccctatgcttacactacccagt 694
Query: 61 gtcaccatgatgaggggcctgggggaatgaattaaacccattggcatccttagaagggct 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 693 gtcaccatgatgaggggcctgggggaatgaattaaacccagtggcatccttagaagggct 634
Query: 121 acagtgcagggcagaaacttcaagctgggagtggcggggaacgctgctgctgctgggatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 acagtgcagggcagaaacttcaagctgggagtggcggggaacgctgctgctgctgggatc 574
Query: 181 tatagcgtccagcctctgtggaacggtttgtcagcactgacaagccctacaacactcttc 240
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 573 tatagcgtctagcctctgtggaacggtttgtcagcactgacaagccctagaacactcttc 514
Query: 241 ctaggcatcatccagagaaatgaaagcactgcacctacagcatgactttagtcaaacaag 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 513 ctaggcatcatccagagaaatgaaagcactgcacctacagcatgacttcagtcaaacaag 454
Query: 301 ccaagcaggatacacagtaggcttcatagcatatgacaccagtgtccctgtgggtgtgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ccaagcaggatacacagtaggcttcatagcatatgacaccagtgtccctgtgggtgtgga 394
Query: 361 atctcaatactgaaagtaagccatgctgagcaaagatgtgtgtgtgtcagtaatggacga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atctcaatactgaaagtaagccatgctgagcaaagatgtgtgtgtgtcagtaatggacga 334
Query: 421 gtcacaggctacagctaatacatctgatgggtccaggtgacacaatccacaccgtcaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 333 gtcacaggctacagctaatacatctgatgggtccaggtgacacaatccacaccatcaaaa 274
Query: 481 caaacctgccaaggtccaacaaaaggaagggctcaagacaggtgtgcggacacccagctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 caaacctgccaaggtccaacaaaaggaagggctcaagacaggtgtgcggacacccagctc 214
Query: 541 tggtccgcccggcg 554
||| ||||| ||||
Sbjct: 213 tgggccgcc-ggcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 953
Length adjustment: 10
Effective length of query: 544
Effective length of database: 943
Effective search space: 512992
Effective search space used: 512992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_n04.g1 MSMg01no149_n04.g1 CHROMAT_FILE:
MSMg01no149_n04.g1 PHD_FILE: MSMg01no149_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:13 2005
(369 letters)
>mm_chr17_5016307_5017075
Length = 769
Score = 667 bits (345), Expect = 0.0
Identities = 363/369 (98%)
Strand = Plus / Plus
Query: 1 taggcgtacaccaccgccaagcccagcccttattaagcttttcaacaaagaagccagtgt 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggcgcacaccaccgccaagcccagcccttattaagcttttcaacaaagaagccagtgt 260
Query: 61 gttttgggtggaatgttgcttctgccacgtagttgtataataggaatgcgtgtgttttga 120
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 261 gttttgggtggaatgttgcttctgccacgtggttgtataataggaatgcatgtgttttga 320
Query: 121 cagtgtggagcagtacggaattcacatgactgtttgaggactgaggtactccacagccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtgtggagcagtacggaattcacatgactgtttgaggactgaggtactccacagccag 380
Query: 181 tataggacaaagtgttgaacagcatccagaggagttgcagtggtgagagagttctctgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataggacaaagtgttgaacagcatccagaggagttgcagtggtgagagagttctctgtt 440
Query: 241 agactggaaactttctaaagaaacacccctccatttcagattgagtgacaaccagggcag 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 agactggaaactttctaaagaaacacccctccatttcagactgagtgacaaccagggcag 500
Query: 301 aacataaagagccttgcgcatgacaaaggtctgtagcatattctatagccactgaaaagt 360
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 aacataaagagccttgtgcatgacaaagggctgtagcatattctatagccactgaaaagt 560
Query: 361 tgttttaca 369
|||||||||
Sbjct: 561 tgttttaca 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
