BAC Information

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BAC

Clone NameMSMg01-150A03
Chromosome17 (Build37)
Map Location 93,747,078 - 93,747,503
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627395, LOC676141, LOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1, LOC676157, LOC627503
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150A03.T7 (MSMg01no150_a03.b1)MSMg01-150A03.TJ (MSMg01no150_a03.g1)
ACCAG352566AG352567
length708731
length of high quality
(start - end)
659 (45 - 703)613 (78 - 690)
definitionCHROMAT_FILE: MSMg01no150_a03.b1 PHD_FILE: MSMg01no150_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:27 2005CHROMAT_FILE: MSMg01no150_a03.g1 PHD_FILE: MSMg01no150_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATATGTACTCCTACAGATATTAAACAAATCTTAAAAATTAAAATTA
TGTATATTTACTTGTATGTACATGTGCACATGCATTTTTACCATGCCACA
CATATGGAGGTCAGAGGGCAATTTGTGAGAGTCAATTCTCACCTTTCCTC
CCCCTAGGTGGATCCTGGGGTGCTGGACCATGAAAGGCAGTCTGTGTTCT
GGTGGAGTAAGGCTTACTCGGATTACCGGGTAGAAAAAAATCTATAAGGG
ACTGTACTGTAAGCTATGCTCCCAGACACAAGAGCCTGACACCACATCAA
CTCCTCAACTCCATAATTCTGTGACTGTCAGTCTCGTAGACAATGTCCCA
AGCTCCTGGTATTCTGGCTACAGCCAGGTAAGCTCCTCCCCACAGTTATG
TGGCAACAGCAAGGTAGCCCAGGCCACTATAAAAGGGGCTCCTTAGTACC
TCCTCTCTCTCTTAAGCTTTTGCTCTCTCCTTGCCTCTACTTAACTCTCT
TCACCCCTCTCGCCATGGTTGCCCTCTACTTCTCTTTCCTTCTTTCTCTC
TCTGCATTTCTACAGTAAACACCTTCAAACCAGACTGTCTCTGCTCATTG
AGATCCACCATGTTAGAGCAATGGAATAAGTCTCCCTCTAAGGATCCATG
CATCTACC
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCCCGAACATCCAAGCCAATTAAGACATGAAGAC
AGCAACAACAGCAGTAGCAGCAGCAACAACAAGAGCAACAATCCCCCACC
CACACACGCACACCAATAAACATAAGAGGGTGGCTATAAAAAAAGTAGCT
GGATCCTCCCAGTCTTCCATACTCCTTTGAAGATATAATCATTTGTTTGC
TTATGATATTGATCCATTTGGAAATATTTTAGTCATTATCCCTTCAAACA
TACACTTTCTATATAATTCCTTTCAGGAAATCCAATAAAAAGTATATGAG
GCCACCTGCAATTTGTCTTCAAGCTCACTAATACTTTCTTGTGCAGTTAC
TCTTCTACATTAAGAACGCCAAGAATATGTTTGTCATCTCAAACACTTTT
ATTTTCCTTTCTAAAGAGTGATTGGGATCTTGGCAATATTCTTCATGGCT
CTATTTAAAATAATTGATAGTTTCCTAGCTTTTTGAAAAATTTTAAATAT
TCTTCTCTAGTACTAACTATGCCATGCATGTAATTTCTAAATGTGTACAC
AAAAGGGCAGACATGCAATATATATATATGAAAACACAAAAAGGGGAAAA
TTGCTTTGTTTTTTAAAAGGGTATATCTGATTGGATGTCATGTGTCATAG
GACTATGAACATTTATTTTAAAGATATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_a03.g1 MSMg01no150_a03.g1 CHROMAT_FILE:
MSMg01no150_a03.g1 PHD_FILE: MSMg01no150_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:27 2005
         (613 letters)



>mm_chr17_93747078_93748090
          Length = 1013

 Score =  816 bits (422), Expect = 0.0
 Identities = 425/426 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagccaattaagacatgaagacagcaacaacagcagtagcagcagcaacaacaagagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 caagccaattaagacatgaagacagcaacaacagcagtagcagcagcaacaacaagagca 367

                                                                       
Query: 61  acaatcccccacccacacacgcacaccaataaacataagagggtggctataaaaaaagta 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acaatcccccacccacacatgcacaccaataaacataagagggtggctataaaaaaagta 307

                                                                       
Query: 121 gctggatcctcccagtcttccatactcctttgaagatataatcatttgtttgcttatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gctggatcctcccagtcttccatactcctttgaagatataatcatttgtttgcttatgat 247

                                                                       
Query: 181 attgatccatttggaaatattttagtcattatcccttcaaacatacactttctatataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 attgatccatttggaaatattttagtcattatcccttcaaacatacactttctatataat 187

                                                                       
Query: 241 tcctttcaggaaatccaataaaaagtatatgaggccacctgcaatttgtcttcaagctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tcctttcaggaaatccaataaaaagtatatgaggccacctgcaatttgtcttcaagctca 127

                                                                       
Query: 301 ctaatactttcttgtgcagttactcttctacattaagaacgccaagaatatgtttgtcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ctaatactttcttgtgcagttactcttctacattaagaacgccaagaatatgtttgtcat 67

                                                                       
Query: 361 ctcaaacacttttattttcctttctaaagagtgattgggatcttggcaatattcttcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  ctcaaacacttttattttcctttctaaagagtgattgggatcttggcaatattcttcatg 7

                 
Query: 421 gctcta 426
           ||||||
Sbjct: 6   gctcta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)