BAC Information

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BAC

Clone NameMSMg01-150A08
Chromosome17 (Build37)
Map Location 12,837,782 - 12,975,618
singlet/doubletdoublet
Overlap geneSlc22a1, Igf2r, Air
Upstream genePark2, Agpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2
Downstream geneEG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150A08.T7 (MSMg01no150_a08.b1)MSMg01-150A08.TJ (MSMg01no150_a08.g1)
ACCAG352576AG352577
length723734
length of high quality
(start - end)
344 (75 - 418)250 (80 - 329)
definitionCHROMAT_FILE: MSMg01no150_a08.b1 PHD_FILE: MSMg01no150_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:28 2005CHROMAT_FILE: MSMg01no150_a08.g1 PHD_FILE: MSMg01no150_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,837,782 - 12,838,124)(12,975,369 - 12,975,618)
sequence
NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGCGACCGCG
GAATTCCAATACTAGGCCCTCCATGTTGTACAGTCCAGGCTTACCTGCCC
TAGGGACAAGGGAACCCAGAATAAAATTGGCTTTTCCCACTCAGCGGAAT
CAAGATAACCCCTCACAGGCATGCCCAAGGCCCGCTCTTCAAAGCATCCC
AAATTCTGTCATTGATAGTTAACACTGTCTGTCACATCATGTGACAGCAC
CATAATTTATGAGGCAGTAGATGAGTGTAAATCACCATGCGTGGTGGTGA
CCTGTCCCTGTAGTCCTCTACCTGCCAGGACCACAGCCCACACAAAGTTT
ATATTCTCAATTCCAAAAATATCCATTTCAATCCACACTGAGACCCTGAA
ATTTTTCACCTTGGACCCCCCCCCCACTGAGGCTCTGGGCAGCCAACACG
TTTTAGTATAAAATGATGAAGGCACAGACGTTTCTATTTTCAGCATGAGT
TAGTTGTCCCTCCCTTCACCCCTGCGTTCATCGAGGATGCTTTCTAGCTG
TGCTGCTAACTCCCCTCCCCAGCCCAAGGCGCGCGTTAGTTGCGCTGAAT
AGACCGAACCAGTTTGTAAGCTTTATAGAAACTCCCCGGCACCTTTTCCT
TGCCCGCAACTCTATTATTCGCTCCCTGCACGCGCTGCGGCTCTTTCCAT
AGAGCCCAACTTATTCCCCGCGA
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGTGGCTGACTGCTGGCTT
CCTAGTAGGTATTAAAGCTACCTGCCTGGCACACTGTCAATCTTGTTTCA
AACCTGTGAGTTTCTCAGTGGGGTGTGCCTTTGCTTTGCCAGTAACAACA
CAGACTTAGGTCTTCAGCTTGCCCTTGCTCAGAGAATGTCACTATCTTCC
CTCTCAACAATGTAGGAGGAAGGGACTTGTTAAGTATGGAGGTCTAATAT
GCTACTAACTTTTGCTAAAGTTGGGGAGAGAATAGTCTTAGCAGGTGATA
TCTTACATAGATCTGCCCTTGGGAGTTCCTAGATCCCACTAATAGGGAGT
TTTACGAAATGAGGAATCACACCCCCCCCCCACAAATAAAGACATGCCCA
GTACCTATGAGAATATAAAACATTGGATATATCATACACAGTTTTTCATG
ATAAATGCCAGAATGGCTACTCTGAACAATGTTTCCGTCTAGACCCTTTC
ATAGCCAGTTTCGGACCCCGATCCCCCAATTTATCATGCTTCATTCCCCC
CTGTCCTGTAATCTACTTGTCCCCAGGTTAACTCACTTCCCCCACCTGTT
TGTCGCCCCCACCCCGCATATCATTCCCCCGCCTGTTCTCTCCCTCACGT
GCCCCCCCCCCCCCTTATACTACCCACCGCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_a08.b1 MSMg01no150_a08.b1 CHROMAT_FILE:
MSMg01no150_a08.b1 PHD_FILE: MSMg01no150_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:28 2005
         (344 letters)



>mm_chr17_12837582_12838325
          Length = 744

 Score =  656 bits (339), Expect = 0.0
 Identities = 342/343 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgtacagtccaggcttacctgccctagggacaagggaacccagaataaaattggcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgtacagtccaggcttacctgccctagggacaagggaacccagaataaaattggcttt 260

                                                                       
Query: 61  tcccactcagcggaatcaagataacccctcacaggcatgcccaaggcccgctcttcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccactcagcggaatcaagataacccctcacaggcatgcccaaggcccgctcttcaaag 320

                                                                       
Query: 121 catcccaaattctgtcattgatagttaacactgtctgtcacatcatgtgacagcaccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcccaaattctgtcattgatagttaacactgtctgtcacatcatgtgacagcaccata 380

                                                                       
Query: 181 atttatgaggcagtagatgagtgtaaatcaccatgcgtggtggtgacctgtccctgtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttatgaggcagtagatgagtgtaaatcaccatgcgtggtggtgacctgtccctgtagt 440

                                                                       
Query: 241 cctctacctgccaggaccacagcccacacaaagtttatattctcaattccaaaaatatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctacctgccaggaccacagcccacacaaagtttatattctcaattccaaaaatatcc 500

                                                      
Query: 301 atttcaatccacactgagaccctgaaatttttcaccttggacc 343
           ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 atttcaatccacattgagaccctgaaatttttcaccttggacc 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no150_a08.g1 MSMg01no150_a08.g1 CHROMAT_FILE:
MSMg01no150_a08.g1 PHD_FILE: MSMg01no150_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:28 2005
         (250 letters)



>mm_chr17_12975169_12975818
          Length = 650

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggtggctgactgctggcttcctagtaggtattaaagctacctgcctggcacactgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 taggtggctgactgctggcttcctagtaggtattaaagctacctgcctggcacactgtca 391

                                                                       
Query: 61  atcttgtttcaaacctgtgagtttctcagtggggtgtgcctttgctttgccagtaacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atcttgtttcaaacctgtgagtttctcagtggggtgtgcctttgctttgccagtaacaac 331

                                                                       
Query: 121 acagacttaggtcttcagcttgcccttgctcagagaatgtcactatcttccctctcaaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 330 acagacttaggtcttcagcttgcccttgctcagagaatgtcactatcttctctctcaaca 271

                                                                       
Query: 181 atgtaggaggaagggacttgttaagtatggaggtctaatatgctactaacttttgctaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atgtaggaggaagggacttgttaagtatggaggtctaatatgctactaacttttgctaaa 211

                     
Query: 241 gttggggaga 250
           ||||||||||
Sbjct: 210 gttggggaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)