BAC Information

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BAC

Clone NameMSMg01-152F01
Chromosome17 (Build37)
Map Location 32,012,873 - 32,166,391
singlet/doubletdoublet
Overlap geneHsf2bp
Upstream geneGlp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk
Downstream geneRrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152F01.T7 (MSMg01no152_f01.b1)MSMg01-152F01.TJ (MSMg01no152_f01.g1)
ACCAG354232AG354233
length718713
length of high quality
(start - end)
391 (55 - 445)328 (85 - 412)
definitionCHROMAT_FILE: MSMg01no152_f01.b1 PHD_FILE: MSMg01no152_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:23 2005CHROMAT_FILE: MSMg01no152_f01.g1 PHD_FILE: MSMg01no152_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,166,004 - 32,166,391)(32,012,873 - 32,013,200)
sequence
CCCCTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAG
GATCCGCGGAATTCTCTATGTATCTCAGGCTGGCCTTTCACTCACAGAGA
TCTCCCAAGTGCCTAAGCGTATAAGATAGGTATCAGATAGCATACTAAAC
TTGATTCTGAGCTAGCATGAGACCTGCCTGTGAGAAGCTGGGTAGGTAAG
CAGTGTCTTGTCTAAGCATCTTTAAAGAACCAACACTGAGACAAAGGCAC
ACTTTCTATTTTGTAAAATATGATTTTATATGTCTGAGTGTGTAGCTTGA
GTGCATGCCTGTGTGTGCCTCGTTGTGTGCCATACCTGAGGAAGTTAGAA
GAGGGTGTTGGATCCTCTGTTACTGGAGTTACTGTTGTGACTGGGAATTG
AACCCCAGGTTCCCCAAAAGAGCTACTCCGTATCGCCCGCAAAACACCAT
TTAAGAAGGAAAAGGAAAGATGTGTGACAGTCACAAATGGAGTAAGGATT
GTTGTTTGGGTCCATCAGAAGGTTTTCCTGCTTGTGAAGGTCTCTCATAT
AGCAGAGGCAGGTCAGGCAAGGTGGCGCGTCCCTGGAGGGTGGGAGGGCC
TTGTTTGACGTCAGATGGTTTGGCCCGTCTTACTGGCCGTATACCTAAAA
TACTGATGACGTGGCCTGTCGCTTACGGCTTGCCTTGGAATTTCCGATCC
ACGATTTACAACCGCTGC
TTTCTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGAAAGCAAGGTG
ACAGATGTGGCAGCATTGGCAAGAAGCAGGGCCTAGGTACTCGCCACCAC
TTTATAGAGATGGCAGATGAGCTTCCTGGGGCTGCAGAACAAATGGCCAC
AAAGCCAGGTGTGGTGGGCAGGCCGGTGATCCCAGTCTACCCACCCATGA
AGGAACTCACCCCCATGGGGCTTCAGAGGCCTTTGCAATGCAGTCTATAG
AGCCCATTCCAGTCCATCACCCTGACTCTATCAACAGAGGAGGGAAATAT
CTCACTCCCAGGGAAAGAATGATTCAGAATCTAGCATCTGGGAGAGGTGC
AAATGTCCTGAGGTGATATAATAAAACTGTTGGGAGCCGCCCTCACATTT
GTTACCTACAAGATGGCACTGACAGCTGTGTCCTAAGTGGTAAACATAAT
CTGTATTCGCGCAGGGGCAGTTTTCCCGCCATGTGTTCTGTCTTTCTCGT
GATGACCATTGGCCCGATGTGCCGCCATCTATCAGTTCATAACACCTCTT
ATGCGGAGGACAATTTTCTTTACAAGGGACCGCGCTTTTGCCTCCCTTTG
CTCTCTTTGCCTTTCTTTTTCTTTTTTCTCCTCTCCCGCCTTTCTTCCGT
TCCTTCTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_f01.b1 MSMg01no152_f01.b1 CHROMAT_FILE:
MSMg01no152_f01.b1 PHD_FILE: MSMg01no152_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:23 2005
         (391 letters)



>mm_chr17_32165913_32166703
          Length = 791

 Score =  712 bits (368), Expect = 0.0
 Identities = 383/388 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctatgtatctcaggctggcctttcactcacagagatctcccaagtgcctaag 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggaattctctatgtagatcaggctggcctttcactcacagagatctcccaagtgcctaag 420

                                                                       
Query: 64  cgtataagataggtatcagatagcatactaaacttgattctgagctagcatgagacctgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cgtataagataggtatcagatagcatactaaacttgattctgagctagcatgagacctgc 360

                                                                       
Query: 124 ctgtgagaagctgggtaggtaagcagtgtcttgtctaagcatctttaaagaaccaacact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctgtgagaagctgggtaggtaagcagtgtcttgtctaagcatctttaaagaaccaacact 300

                                                                       
Query: 184 gagacaaaggcacactttctattttgtaaaatatgattttatatgtctgagtgtgtagct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gagacaaaggcacactttctattttgtaaaatatgattttatatgtctgagtgtgtagct 240

                                                                       
Query: 244 tgagtgcatgcctgtgtgtgcctcgttgtgtgccatacctgaggaagttagaagagggtg 303
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgaatgcatgcctgtgtgtgcctcgttgtgtgccatacctgaggaagttagaagagggtg 180

                                                                       
Query: 304 ttggatcctctgttactggagttactgttgtgactgggaattgaaccccaggttccccaa 363
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ttgaatcctctgttactggagttactgttgtgactgggaattgaaccccaggttccccaa 120

                                       
Query: 364 aagagctactccgtatcgcccgcaaaac 391
           ||||||||||||||||||||| ||||||
Sbjct: 119 aagagctactccgtatcgcccacaaaac 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no152_f01.g1 MSMg01no152_f01.g1 CHROMAT_FILE:
MSMg01no152_f01.g1 PHD_FILE: MSMg01no152_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:23 2005
         (328 letters)



>mm_chr17_32012673_32013400
          Length = 728

 Score =  611 bits (316), Expect = e-179
 Identities = 325/328 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagaaagcaaggtgacagatgtggcagcattggcaagaagcagggcctaggtactcgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cacagaaagcaaggtgacagatgtggcagcattggcaagaagcagggtctaggtactcgc 260

                                                                       
Query: 61  caccactttatagagatggcagatgagcttcctggggctgcagaacaaatggccacaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccactttatagagatggcagatgagcttcctggggctgcagaacaaatggccacaaag 320

                                                                       
Query: 121 ccaggtgtggtgggcaggccggtgatcccagtctacccacccatgaaggaactcaccccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaggtgtggtgggcaggccggtgatcccagtctacccacccatgaaggaactcaccccc 380

                                                                       
Query: 181 atggggcttcagaggcctttgcaatgcagtctatagagcccattccagtccatcaccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggggcttcagaggcctttgcaatgcagtctatagagcccattccagtccatcaccctg 440

                                                                       
Query: 241 actctatcaacagaggagggaaatatctcactcccagggaaagaatgattcagaatctag 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 actctatcaacagaggagggaaatatctcactccaagggaaagaatgattcagaatctag 500

                                       
Query: 301 catctgggagaggtgcaaatgtcctgag 328
           || |||||||||||||||||||||||||
Sbjct: 501 cacctgggagaggtgcaaatgtcctgag 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)