BAC Information

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BAC

Clone NameMSMg01-152I16
Chromosome17 (Build37)
Map Location 94,106,812 - 94,107,169
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1, LOC676157, LOC627503
Downstream geneLOC668885, LOC668886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152I16.T7 (MSMg01no152_i16.b1)MSMg01-152I16.TJ (MSMg01no152_i16.g1)
ACCAG354385AG354386
length7221,237
length of high quality
(start - end)
362 (72 - 433)---
definitionCHROMAT_FILE: MSMg01no152_i16.b1 PHD_FILE: MSMg01no152_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:39 2005CHROMAT_FILE: MSMg01no152_i16.g1 PHD_FILE: MSMg01no152_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCCATACCTTGATAGACTGTACCCTCAAACAGCAAGGAAAATAAGCC
CTTTCTACATCATGGTATTTTATCACAGAAACATGGGAAGTAAGTAAAAT
TGAAAGTTGGTTCCAGGAATAAGGGCATTATTGAGATAAACATGACCACA
TGATCCTTAGGCTTTTGGATTTTGTTTATGGAAGAAATATGTAAGATTTT
GGAACTCTGGGTTAGAAATCAGGGTGCAGTAAGTTGTGGGAGCTTGAAAA
TCAAGAATGTCAAGAGAAACAGTGCAAACTCAGCCCATGATACTTGAGAG
AAAAAAAATGGGACTCAGGTATTTTTCATAATTTGTTCAAGTATCTGGTC
TTAATTTGCCCAAGGAACCTAAATAAAGTTCAGTTAACAAATAACAGAAT
AACTTGCTTGGTGCAAGAAGTTTTTAGACAGGATAACATTACGGTTGGTG
ACGAACATTAGTTGTAATTGTAAAGATCATACTGAAGGGAAACCTTTTAC
ACCACCACTAGTATAATATGAAATGTGTCTCAAGAGCAAAACTTGATATA
TTTAAATGGAGAAACCTTCAGCCGAAGGACTCCCCCACTTGAATATAAAA
ACCCAAGGAAATACTTACCCCCGCACAGCTTTACATCACCCTTCCACGCC
CTGCAGTTGCGGTCCTAACCTG
AAAACGGAATAAGAGCCCTGGAAAAACCCGGGCGGCGCCCTTAAACTANT
GCACCGAATGATAGTGGACAGGCATGACCGCGCGTCCTGTGTCTCTCAAA
AACCGCCGAGAACCGGACAGAAAGGGTCCGCGAAAAAAAAAAAGCGTCAC
GCACAATGCGCGGTAACATTATACGGATGTCGAGTCAACACGGATCCCTT
CACCACTCTTTCTTTGCGCGATCCCCCCCCGCTTCACTTTCTCTTGCCAA
TACCGCCCGTCCGGACACACTAAACGAACGTCACATGTTTCGCGATTAAA
TAGATTTGACAGCGCAGGCAGCGTGAAATCTAAACCGAAGCACACCCGGG
CAACAACAGACGACCCGGCTACCGGTTATGCCGATACTATCAACGCGAGG
CTGAGCATTCACCAGAGTGAAATTTGGGCATCCAAAATAGCCACACGTCT
GACGCCCAGAAGATGACAACGCCCGTGTGCGCGTCCCAACTCCGCCACAA
ACTTAATTTAACCCGGGGGCGACACCCCACCGAACAAACAGGTTTTGGGT
AACACACATAATTGTGATGAAACGAGCCACCGACATCAGGCCATGTTCTA
AGAGNGTACCTGTCCCGGATTAAAAACCACGCACAATCGTTCGTCATACG
ATCCGGCGTCATTATATACCAATTCCACCGGTGATCCCGATATTAGCAGA
CCACGCGACAAACAAGTGTCGACCACTACATAACATAATATACGGGGCGT
GGGCACAATAAAAGACCGGTCAGCGATGGCAACCCCACGGAGCCCCATCA
CCCCGAGTACTCACAAGAACAAACATATAGTTCTTAGTGCGCTGATATAT
TAAGAACGCGCGCGTATGAGAAGACGCGACACAAACAATACGGCCGCAGA
TAGAAGAACCAAACACACACGCGAAGAGCGGCAGATATAAATATAACGCG
CGGCGGATACGCGTAAAGCCAGGTGCGATAATAGATGGGGCGAGACAAAC
AAGTTATGTATCACCCCTATTTCGCCGTGTNCCGCCACCGTAGATGAGCC
CTCCCTATTCTCCTGCGTATCCACACATGGTACGAATAATACGCAGCGGT
GAAATCAACGCCGAACCAGTCGGTGCATATCTCGCCTGTACTTCATCTGC
GGAGTGATCTGTCGCGCGATATTTTATACTCGACAACGTCGTTGCTAGTA
TCAATACACTCGCTTGTCCCATACCGCTGCACACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_i16.b1 MSMg01no152_i16.b1 CHROMAT_FILE:
MSMg01no152_i16.b1 PHD_FILE: MSMg01no152_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:39 2005
         (362 letters)



>mm_chr17_94106608_94107369
          Length = 762

 Score =  654 bits (338), Expect = 0.0
 Identities = 353/358 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   cctcaaacagcaaggaaaataagccctttctacatcatggtattttatcacagaaacatg 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 562 cctcaaacagcaaggaaaataagccctttctacatcaaggtattttatcacagaaacatg 503

                                                                       
Query: 65  ggaagtaagtaaaattgaaagttggttccaggaataagggcattattgagataaacatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 502 ggaagtaagtaaaattgaaagttggttccaggaataagggcattattgaaataaacatga 443

                                                                       
Query: 125 ccacatgatccttaggcttttggattttgtttatggaagaaatatgtaagattttggaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccacatgatccttaggcttttggattttgtttatggaagaaatatgtaagattttggaac 383

                                                                       
Query: 185 tctgggttagaaatcagggtgcagtaagttgtgggagcttgaaaatcaagaatgtcaaga 244
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 382 tctgggttagaaatcagggtgcaataagttgtgggagtttgaaaatcaagaatgtcaaga 323

                                                                       
Query: 245 gaaacagtgcaaactcagcccatgatacttgagagaaaaaaaatgggactcaggtatttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaaacagtgcaaactcagcccatgatacttgagagaaaaaaaatgggactcaggtatttt 263

                                                                     
Query: 305 tcataatttgttcaagtatctggtcttaatttgcccaaggaacctaaataaagttcag 362
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 262 tcataatttgttcaagtatctggtcctaatttgcccaaggaacctaaataaagttcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)