BAC Information

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BAC

Clone NameMSMg01-152L11
Chromosome17 (Build37)17 (Build37)
Map Location 35,354,617 - 35,354,98435,685,469 - 35,685,781
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneH2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta
Downstream geneNfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152L11.T7 (MSMg01no152_l11.b1)MSMg01-152L11.TJ (MSMg01no152_l11.g1)
ACCAG354517AG354518
length733741
length of high quality
(start - end)
371 (50 - 420)313 (79 - 391)
definitionCHROMAT_FILE: MSMg01no152_l11.b1 PHD_FILE: MSMg01no152_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:53 2005CHROMAT_FILE: MSMg01no152_l11.g1 PHD_FILE: MSMg01no152_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:53 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,354,617 - 35,354,984)(35,685,469 - 35,685,781)
sequence
NCCATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTTAAGGACCAGGGCAGTTTTTACATGGAGAGACGGGATG
GAGACGGTTTATTAAGTTTTCTGGTTGGTTTTGTGAAGAGGGCTCCCAGC
TTCTATGACCCAGATAGGCAAGCATTGTAGCCTGTGAGCGGCTCTGGGGC
AGGGAGAAGAGCCGAGGTGAAGCCTGGGAGAATGGCAGGAGCAGCTCCTG
GGTCTCTTAAGTTAGTTGCAAGCCCTTGGCGGGCCACTATGTCCTGTCTC
AGAACCCCCAGCAAGATCACAGTGTCTGAAAAGGCTGAGCTCATGTGGTA
GAGCCAGGCTGGGCCCCGCAGGACACTCCCATTCTTGATCCTCACAGGTG
CCCCAGGTCGACATTACAGAAAAACCCCCAATTCTCCGATTCCAGCCTTG
CTTGCACAGGCTCTCACACACCTGTGCTTCTCTGCCTGTAGACGCTCAGT
CGTGTACCACCACATTCCAGATCACGCTATGCTTTGTGACTTCTCAGCCT
TGTTCCCAGCTCTTTGGTCAGTCTCAAGGATTGACGATGCCCCTGGCCTC
CTGCGAGCTCTTTAGCTGCACTCTATGTTCCCCACTGTTTCCCCCCCCTA
TCCCAGCCTTCAGCCCCTGAGCGCCAATCGCCGTTTCCATTCCCTCATTT
TGTATCCTTTTGCCCCCTTGCTTCCTCCCTTTG
NTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGAAGGGGGTCTTTGTAGG
CACCGGCTTAGGCTGGGGAGAAGGAAGTGAATGACAAAGAGGAAAGACTG
AGAGGAGTCTTCCTGTGTAAAGACAGCTGGAGAGAGGTTGTCCTTAGCTC
CTCCCTCCTCTCCCTGAGTCCTCAAGAAGAAGGTGACAGTCCTGGCCCCC
TCCCACTGGGCATGTCCTCAGAGCTGTTTTTCCTGTAGTGGGGATTGGCG
GCCCTGACCAAGAGCACTGAGGGACATGATTTGTCTGTGTGTTCAGTCCC
TACCAGACTAGGCCCCCTGTGACAGAAATCTCTCTCAGCTCCACTCATCC
CTGGTAGCACTCTGCTGGCATCCTGTTAGTACTCTACTAGCCTCCCTGGG
AGCACTCTGCTGGTATCTCTGGTAATACTCTGCTGATATCTACAGTTTCT
ACCTTACAGAAGACAACTTGCTTTCTTCATTCTCTCCTCACCTTTTCTCT
GCACCCTGCCTGTCTCTCAATCACTACGAACATTTCTTTACCACCTCTTA
CTCTTGTTTTTGCCATCTGTATATGTGCTGACCCTGATTTTGTTATGCCT
CTTCCTTCTTCTAGCTATCTGTTTGTAGCTTCTTTGCGTTTTTCTTCATC
TATTGTCTTGTCGCGCGTTTTTTCATCCTTCCTCTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_l11.b1 MSMg01no152_l11.b1 CHROMAT_FILE:
MSMg01no152_l11.b1 PHD_FILE: MSMg01no152_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:53 2005
         (371 letters)



>mm_chr17_35354414_35355185
          Length = 772

 Score =  619 bits (320), Expect = 0.0
 Identities = 356/368 (96%), Gaps = 1/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatttaaggacca-gggcagtttttacatggagagacgggatggagacggttta 62
           ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatctaaggactaagggcagtttttacatggagagacgggatggagacggttta 263

                                                                       
Query: 63  ttaagttttctggttggttttgtgaagagggctcccagcttctatgacccagataggcaa 122
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaagttttctggttggttttgcgaagagggctcccagcttctatgacccagataggcaa 323

                                                                       
Query: 123 gcattgtagcctgtgagcggctctggggcagggagaagagccgaggtgaagcctgggaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 gcattgtagcctgtgagcggctctggggcagggagaagagccgaggtaaagcctgggaga 383

                                                                       
Query: 183 atggcaggagcagctcctgggtctcttaagttagttgcaagcccttggcgggccactatg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 384 atggcaggagcagctcctgggtctcttaagttagttgcaagcccttggccggccactgtg 443

                                                                       
Query: 243 tcctgtctcagaacccccagcaagatcacagtgtctgaaaaggctgagctcatgtggtag 302
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 444 tcctgtctcggaacccccagcaagatcacagtgactgaaaaggctgagctcatgttgtag 503

                                                                       
Query: 303 agccaggctgggccccgcaggacactcccattcttgatcctcacaggtgccccaggtcga 362
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 504 agccaggctgggccccacaggacactcccattcttgatcctcacaggtgccccaggtcgc 563

                   
Query: 363 cattacag 370
           ||||||||
Sbjct: 564 cattacag 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space:   276206
Effective search space used:   276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no152_l11.g1 MSMg01no152_l11.g1 CHROMAT_FILE:
MSMg01no152_l11.g1 PHD_FILE: MSMg01no152_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:53 2005
         (313 letters)



>mm_chr17_35685269_35685981
          Length = 713

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagaagggggtctttgtaggcaccggcttaggctggggagaaggaagtgaatgacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cacagaagggggtctttgtaggcaccggcttaggctggggagaaggaagtgaatgacaaa 454

                                                                       
Query: 61  gaggaaagactgagaggagtcttcctgtgtaaagacagctggagagaggttgtccttagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaggaaagactgagaggagtcttcctgtgtaaagacagctggagagaggttgtccttagc 394

                                                                       
Query: 121 tcctccctcctctccctgagtcctcaagaagaaggtgacagtcctggccccctcccactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tcctccctcctctccctgagtcctcaagaagaaggtgacagtcctggccccctcccactg 334

                                                                       
Query: 181 ggcatgtcctcagagctgtttttcctgtagtggggattggcggccctgaccaagagcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggcatgtcctcagagctgtttttcctgtagtggggattggcggccctgaccaagagcact 274

                                                                       
Query: 241 gagggacatgatttgtctgtgtgttcagtccctaccagactaggccccctgtgacagaaa 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gagggacaggatttgtctgtgtgttcagtccctaccagactaggccccctgtgacagaaa 214

                        
Query: 301 tctctctcagctc 313
           |||||||||||||
Sbjct: 213 tctctctcagctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)