BAC Information

Click to search

BAC

Clone NameMSMg01-152N23
Chromosome17 (Build37)
Map Location 15,726,119 - 15,726,627
singlet/doubletsinglet
Overlap geneLOC665017
Upstream geneThbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573
Downstream geneLOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383, LOC100041394, LOC213781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152N23.T7 (MSMg01no152_n23.b1)MSMg01-152N23.TJ (MSMg01no152_n23.g1)
ACCAG354626AG354627
length720840
length of high quality
(start - end)		519 (76 - 594)45 (76 - 120)
definitionCHROMAT_FILE: MSMg01no152_n23.b1 PHD_FILE: MSMg01no152_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:06 2005CHROMAT_FILE: MSMg01no152_n23.g1 PHD_FILE: MSMg01no152_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAAACTGATACCCGTGAATGCATTTATCCTCTTCTTTAC
TCTGCTCAGAGCAACTGAAGCATCTCTGGAGCAGCGTAGCACTGGGGTGT
GGGGAGCCAGAGAGGGAGAGTGGGAAGGTGAGGAGAATAAAAACTGTAGT
GGTGAAATTACAGCACCTGATGGGTCTGAGAAACACAGGGATTGCCCAAG
TGCTCCTGGGTGTGTCTGTTCAGGCATGTGGGTAGGTAACAAAAAAACAG
TAGCCTTCGCTTGGTTCCTCTTTATAATCCTCTCTTATTTCCTACTTGGC
CATGATATGAAGAGTTCTGCTCAGTCATATCCGCCACGGTAGACTTCTGA
AGTTGTTAAATAAGTCCTCCCTCCTCTAGCTTGTGTCCACTGGGCACTTC
ATCACAGCAACACGAAAAGCCTAGGATGAGAATATACAGAAGGCTGCAGA
GGCTGTGAGAGAGAGGAGGTACAGGAGCTTATGAGAGAGTTTTTCTGCCT
GTGTTTCAGTCGGCCCTTTGGAAATGCTATAAATATCTTGAACACTGCAG
AATTTTGATGTGGCCCATGTTTCCTTGCATTCGCCGACCCTCTCAGTGGC
TCATGCTTCTTATGCAGTCTCCCATTCTATATCGCGCTGTCCTGTTTAGC
CACCCTTTTTTTGTGCTTAT

TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCCCAACCTCAAGTCCTTTGC
TGGGGGGTGGGGGGGTGGGGAAGCCNNCCCTTTTTTTTTTTCCCCCCTTT
TTCCCCCCCTTTTTTCCTACCTTTTCCCTTCCCTTCCTCCCTCTTTCTTT
TTCCCCCCTTTTCCTTCCTCCCTCCCCCTTTCCCCCTTTTCTTTCTCCCT
CCCCTTTCTCCTTTTCTCGTCCCAAATACCCCTCCTTCTTCACAAATCAC
TATCCCACTCCCTGGTTTGGCAAAACCGCTATTTTTTTTTTTCTTACCGC
GGTTATTTGCTCTACCCGCCATACGCATTTTCTATTATTCCCGCCCTCAA
TCCCCATTATACGCCCCGATTCTCCCGTTGCACTCGTTCCCCGATTTGCT
ACCATCCAACGGCCCCCCGTACGGTTTTCTACTCTTACGTTTACCCCCAA
ATCTTATTCGTTTCTTTCGCTTTCCCCCATTTTAATACGCTATTCTCCCT
ACCAATTATACCCCCATTTTCCCCCCCATACTCCGCTTTTTTTCTTTTTC
CCTTATCCCTTTCCGATACGCGTCCACGTACGCGACCCTATCGTTTTTCC
CCCGGTATATTGCGCCTTTCTTATTCCCCACCGTATGATTCTTCACCGTT
CCCCCCCCCTTTATTTATTTCCCGTTTAGCGCTTCTTACTCGCTATACGG
CGTTAAGCGATTTACTTCTCGCCGCTATGACTATCTTCCTCTTTATCCAT
TACCGCACTCGTATTTTTCGGTCTATCTCTCTATTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_n23.b1 MSMg01no152_n23.b1 CHROMAT_FILE:
MSMg01no152_n23.b1 PHD_FILE: MSMg01no152_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:06 2005
         (519 letters)



>mm_chr17_15726119_15727041
          Length = 923

 Score =  919 bits (475), Expect = 0.0
 Identities = 499/509 (98%), Gaps = 4/509 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatgcatttatcctcttctttactctgctcagagcaactgaagcatctctggagcagc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgaaggcatttatcctcttctttactctgctcagagcaactgaagcatctctggagcagc 450

                                                                       
Query: 61  gtagcactggggtgtggggagccagagagggagagtgggaaggtgaggagaataaaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gtagcactggggtgtggggagccagagagggagagtgggaaggtgaggagaataaaaact 390

                                                                       
Query: 121 gtagtggtgaaattacagcacctgatgggtctgagaaacacagggattgcccaagtgctc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtagtggtgaaattatagcacctgatgggtctgagaaacacagggattgcccaagtgctc 330

                                                                       
Query: 181 ctgggtgtgtctgttcaggcatgtgggtaggtaac----aaaaaaacagtagccttcgct 236
           ||||||||||||||| |||||||||||||||||||    |||||||||||||||||||||
Sbjct: 329 ctgggtgtgtctgttaaggcatgtgggtaggtaacaaaaaaaaaaacagtagccttcgct 270

                                                                       
Query: 237 tggttcctctttataatcctctcttatttcctacttggccatgatatgaagagttctgct 296
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggttcctccttataatcctctcttatttcctacttggccatgatatgaagagttctgct 210

                                                                       
Query: 297 cagtcatatccgccacggtagacttctgaagttgttaaataagtcctccctcctctagct 356
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 209 cagtcatatctgccacggtagacttctgaagttgttaaataagttctccctcctctagct 150

                                                                       
Query: 357 tgtgtccactgggcacttcatcacagcaacacgaaaagcctaggatgagaatatacagaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tgtgtccactgggcacttcatcacagcaacacgaaaagcctaggatgagaatatacagaa 90

                                                                       
Query: 417 ggctgcagaggctgtgagagagaggaggtacaggagcttatgagagagtttttctgcctg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  ggctgcagaggctgtgagagagaggaggtacaggagcttatgagagagtttttctgcctg 30

                                        
Query: 477 tgtttcagtcggccctttggaaatgctat 505
           |||||||||||||||||||||||||||||
Sbjct: 29  tgtttcagtcggccctttggaaatgctat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 923
Length adjustment: 10
Effective length of query: 509
Effective length of database: 913
Effective search space:   464717
Effective search space used:   464717
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |