BAC Information

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BAC

Clone NameMSMg01-152P21
Chromosome17 (Build37)
Map Location 36,621,669 - 36,621,922
singlet/doubletsinglet
Overlap genenone
Upstream genePou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4
Downstream geneH2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152P21.T7 (MSMg01no152_p21.b1)MSMg01-152P21.TJ (MSMg01no152_p21.g1)
ACCAG354715AG354716
length740741
length of high quality
(start - end)
254 (72 - 325)444 (146 - 589)
definitionCHROMAT_FILE: MSMg01no152_p21.b1 PHD_FILE: MSMg01no152_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:15 2005CHROMAT_FILE: MSMg01no152_p21.g1 PHD_FILE: MSMg01no152_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:15 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCANGACTCCGCGG
AATTCAAAAGGGAATTGCTAAAATAAAATAAAACAATAACAAAAAGCAAT
CTGACTTTCTCCAGCCCCTCTATGGTCCAGTAGCCTCCATGGCTTTTTAA
CACCAACAAACCACTAGTAAACACTAGTGTTGGGCAGATTTGTGTGTTGC
TGTAAAGCTGCCTTGATCATTTGCTTTCTTGGGTGTTATCCTTCATGAAG
GTATTTCTCTCTTTTCCTTCTCTGTAAAATATATAAGACTAAGCTTAAAA
GCATTTTCTGAAGTGATACATGAGTTTCTATCCCTCTCTATATAAGATCT
GGTTACCATGAGTCAGCCAAAATAAACTCTGCCTGACATTCTTAGGTATG
ATTCTGAAAGAGGTGTTTTCTGTTGTCACTGGGGTGTCACTTAGTTCCCC
ATTCACTAGCAGCACCTAGAACATGGCACTAGGGTACAAAGGCCAGTGGA
AGTCCTCCTCTCTCAACTCATGGATGTATTTTCATAAAAAGATATTAATA
CCAGCATCTATTCCACCTCTAGAGAACATGAATGCTAGCCTAGGCTCCTA
TACCTAACAAAACTCTCAATCACCATAGACGGAGCATACAATATATTCCA
CGACAAAGCCAATTTTACACATAATCTTTCCTTAAATCCACCTCTACATA
GAATATTAGGTGAAAAACTACACCCTTGTGAGTGAAATTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACC
TGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
TGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC
TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCTGAAAATTGGTC
ATAGTACTACCAGAGGATCCAGCAATACCTCTCCAGGGCATATATCCAGA
AGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATCGCCA
CCTTATTTATAATAGTCAGAAGCTGGAAAGAACTCAGATACCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTC
AGCTATTAAAAAGAATGAATTTACGAAATTACTAGCCAAATGGATGGACC
TGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAATTCACAC
AATATGTACTCACTGATACGTGGATATTAGCCCACAACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_p21.b1 MSMg01no152_p21.b1 CHROMAT_FILE:
MSMg01no152_p21.b1 PHD_FILE: MSMg01no152_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:15 2005
         (254 letters)



>mm_chr17_36621469_36622122
          Length = 654

 Score =  468 bits (242), Expect = e-136
 Identities = 251/254 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaaataaaacaataacaaaaagcaatctgactttctccagcccctctatggtccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aataaaataaaacaataacaaaaagcaatctgactttctccagcccctctatggtccagt 395

                                                                       
Query: 61  agcctccatggctttttaacaccaacaaaccactagtaaacactagtgttgggcagattt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agcctccatggctatttaacaccaacaaaccactagtaaacactagtgttgggcagattt 335

                                                                       
Query: 121 gtgtgttgctgtaaagctgccttgatcatttgctttcttgggtgttatccttcatgaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 334 gtgtgttgctgtaaagctgccttgatcatttgctttcttgggtgttatccttcatgaagt 275

                                                                       
Query: 181 tatttctctcttttccttctctgtaaaatatataagactaagcttaaaagcattttctga 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 274 tatttctctcttttccttctctgtaaaatatataagactaaacttaaaagcattttctga 215

                         
Query: 241 agtgatacatgagt 254
           ||||||||||||||
Sbjct: 214 agtgatacatgagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)