BAC Information

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BAC

Clone NameMSMg01-153I24
Chromosome17 (Build37)
Map Location 65,225,700 - 65,225,952
singlet/doubletsinglet
Overlap geneLOC100043871
Upstream geneFert2, LOC669778, Pja2, LOC100043582, Man2a1, 4930583I09Rik
Downstream geneE130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153I24.T7 (MSMg01no153_i24.b1)MSMg01-153I24.TJ (MSMg01no153_i24.g1)
ACCAG355126AG355127
length734734
length of high quality
(start - end)
41 (205 - 245)253 (67 - 319)
definitionCHROMAT_FILE: MSMg01no153_i24.b1 PHD_FILE: MSMg01no153_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:58 2005CHROMAT_FILE: MSMg01no153_i24.g1 PHD_FILE: MSMg01no153_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCGGCCGCTATACGACTCCTATAGGTCCCAAATCCGCGGAATTCCTTCCT
CGGCTTCCCGATTGACCGATCTGGTTTAGATGCAGGTATGCTCTAGATTC
GTTGAGACAGCCATAAATCTCACTGCGTTTACTCTGTGTCCATGACAGTG
CATACCTGGAAGGCCCTCTTATGCAGTCAGGCTGCACAGCTCTGGCAGAC
CGGGCTGATCTGCTTCTGCCTACTTCTGTGCTCACCTGCTGTCGCAGCAT
GGTGTCCAGCCATGCTGCTTGCCCGCTACCTACCTGTGGTGGATGATAGC
GTTTACCGAAGCTGAGTAAGTCGTTCAGCACAATAAAAGACCTGTCGGCT
ATCATGCAAAGCGAGGCGGCTTTTTTACATTTTAATTCCGATTTTTAGTT
CACTTTTACTGTGTTTTAAAAACTAATTGACCCATGCCTATTGGCAATTA
CTCTATGTCTCCTTCTGCATAACATTTGAGCAGACGTCTAAGTTCTTTAT
CCCTTGCTAACGTATAGGGCAGTGCTTTGTTCCAACTTCAAGGCTTTAAA
ATCTGAGGTCACCTATGACATGTTGATGCTAACCAAATATTTCTCACCTG
ACGGGCTTACTTCAGCATTTTTAGTCTCACTCCGCATTTTCTTTTCTGAG
ATACGATGAGACTATGCTACCCAGCCTTGTCTTGTACTCATTATTAACCC
CACGCTACTCTTCCCCTCAGCCCTTCCACTGTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGAAGTTCTCTTGACTTTCCAGATAGGTTCTGATCC
TGTGTGGCCACAAAATAATGGTGAGGGTTCCCCCACCCACCCACCCACCC
ATCCACCATGCACAGGAGACATTCAGACCCACTCACTGGGCTCTTGAAAT
GAGGACAGTTTCGAACCTGGGATTTCTGTGCAATCAGTTTTGCTCCATAT
AATTCCTTTCCCCGTGTTTCTAACTCCCTTAACACACATCTTATGGTGCA
CAGTTGAGGCTTTCCCATTTGGTAGCAGGGCAGCTGGTCCCGCAGCTGGA
TGCAACCCCACAGTGCCGCCTGGCAGAAAGTGCTGGACAAAAGGATCGGG
TAGGGCTCACAGACTCCGAAATTGTTGCGGAAAAAGCAGAGATGCTTCTC
GGCATGTTTCTGCCTGGTGATCTTCATGCCGGCTTATGCAATCAGACTCA
CCAGTACCAGCCTCACTTCCGCACTCTTAAAAATTTGTATTTCCCGGAAC
AAAGTCACATTTCTAACTTTTAACAAAGAACAGCATATTCACCATCAGAG
CGCAGCTACCTCTACCCTGTCCGTTTCCACCTCCTAGTCTGACAACTCTG
TTTGATTGCCCTTATAGTTATTCTTTACATGCTCCCCGCCTGGGATAAAT
TCCGGCACCTTGTACAGATTACCAATTTCCGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_i24.g1 MSMg01no153_i24.g1 CHROMAT_FILE:
MSMg01no153_i24.g1 PHD_FILE: MSMg01no153_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:58 2005
         (253 letters)



>mm_chr17_65225409_65226061
          Length = 653

 Score =  466 bits (241), Expect = e-136
 Identities = 250/253 (98%), Gaps = 1/253 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagttctcttgactttc-cagataggttctgatcctgtgtggccacaaaataatggtgag 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aagttctcttgactttcacagataggttctgatcctgtgtggccacaaaataatggtgag 485

                                                                       
Query: 60  ggttcccccacccacccacccacccatccaccatgcacaggagacattcagacccactca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 484 ggttcccccacccacccacccacccatccaccatgcacaggagacattcagacccactcg 425

                                                                       
Query: 120 ctgggctcttgaaatgaggacagtttcgaacctgggatttctgtgcaatcagttttgctc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctgggctcttgaaatgaggacagtttcgaacctgggatttctgtgcaatcagttttgctc 365

                                                                       
Query: 180 catataattcctttccccgtgtttctaactcccttaacacacatcttatggtgcacagtt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 catataattcctttccccgtgtttctaactcccttaacacacatcttatggtgcacagtt 305

                        
Query: 240 gaggctttcccat 252
           ||||||| |||||
Sbjct: 304 gaggcttccccat 292


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)