BAC Information

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BAC

Clone NameMSMg01-153O11
Chromosome17 (Build37)
Map Location 11,994,179 - 11,994,612
singlet/doubletsinglet
Overlap genePark2
Upstream genePacrg, LOC100041113
Downstream geneAgpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153O11.T7 (MSMg01no153_o11.b1)MSMg01-153O11.TJ (MSMg01no153_o11.g1)
ACCAG355354AG355355
length724728
length of high quality
(start - end)
67 (38 - 104)434 (67 - 500)
definitionCHROMAT_FILE: MSMg01no153_o11.b1 PHD_FILE: MSMg01no153_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:23 2005CHROMAT_FILE: MSMg01no153_o11.g1 PHD_FILE: MSMg01no153_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
GACAGTCCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
GTGTGAGTGTGTGTGTGTGGTACTGTTAGAAGGGTTAGGAGGTATGACCT
TATAGGAGGAAGTGTGTCACTGTGCGTATGGGCTTTGAAGCTCTGTCCAG
TGCGGAAGAGTCAGTCTGCTCCTTGGCTTCCTTTGGATGAAGATGTAGAA
CTCTCAACTGCATTTGTGCCCTGCCTGCCTGAATGCACCATGCTCTTGCC
TTTATGATACTGGATTGATGCCTCTGAACCGGTAAGCCAGCCCCAATTAT
ATATTGTCCTTTATACGATCTGCCTTGCTCATGCTGACTGTTCACAGCCG
TAAAACCCTAACCCTGTCTGTCCTGTGTGTGTGTCCGCGTGCACGCCCCT
CCCCCCACCACAATACCTCACATAAACCATATTAGAAACCTACCACTGTA
GAACATCTGTGCGTCTTCCTACATTATTTGTACCTACTCCTTTACTTTTA
CCGTAAAAATGGACCTCTCCTAGAGCATCACGATGCTCTACTATATATCA
CGAGCTACTAAATAGATATGACACTGCCAGTAATCAGTTACTTCCTTCCG
AATGCTTGACCACATAGTTTTCAGAGATCACCTAGCTGTCTATTATTACG
CGGTTGCCCGTGCCCGCCTTGTTA
TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGAATATATTTACAGATCACAGTTTCCTCCCCAA
ATAATGCCTTCAATTCCAGCAACAGAAGTCCCAAGACTCAAAGATAAGGA
CAGTTTGTGCTGGTTTATAAGAAGTCCAGGTGGAAGCCGGTGGCGGAGGA
GTGGATTTGGAAACTCAACATGTTGCAGGGCCTAATTTTGTGCTCTTTGG
GATATGCTTCTGGGAAAACAGGTTTTTGTCTTCCCACAATGTCAGAACTG
ATCAAATAACAATGAATTCACAGGGTACAGCAGTTTCAGTGGCTCCAGCT
TATTAGAAAATCTCACCTAATTTGGCAATCTGGGTGAGGCAAATCTAGGT
TCTTTGATATCAATCTTAATTACTAATATTAACTTTCATATGGTGAGTAC
AGTGTGTGTGTGTCTATGTGTGTGTGGTATGTGTGTATGTATGTGTATAT
GACGCGTCCGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXX
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_o11.g1 MSMg01no153_o11.g1 CHROMAT_FILE:
MSMg01no153_o11.g1 PHD_FILE: MSMg01no153_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:23 2005
         (434 letters)



>mm_chr17_11993979_11994814
          Length = 836

 Score =  777 bits (402), Expect = 0.0
 Identities = 427/436 (97%), Gaps = 4/436 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaatatatttacagatcacagtttcctccccaaa-taatgccttcaattccagcaacag 59
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tgaatatatttacagatcacagtttcctccccaaaataatgccttcaattccagcaacag 260

                                                                       
Query: 60  aagtcccaagactcaaagataaggacagtttgtgctggtttataagaagtccaggtggaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtcccaagactcaaagataaggacagtttgtgctggtttataagaagtccaggtggaa 320

                                                                       
Query: 120 gccggtggcggaggagtggatttggaaactcaacatgt-tgcagggcctaattttgtgct 178
           ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gccggcggcagaggagtggatttggaaactcaacatgtgtgcagggcctaattttgtgct 380

                                                                       
Query: 179 ctttgggatatgcttctgggaaaacaggtttttgtcttcccacaatgtcagaactgatca 238
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgggatatgcttctgagaaaacaggtttttgtcttcccacaatgtcagaactgatca 440

                                                                       
Query: 239 aataacaatgaattcacagggtacagcagtttcagtggctccagcttattagaaaatctc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataacaatgaattcacagggtacagcagtttcagtggctccagcttattagaaaatctc 500

                                                                       
Query: 299 acctaatttggcaatctgggtgaggcaaatctaggttctttgatatcaatcttaattact 358
           ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 acctaatttggtaatctgggtgaggcaaatctaggttctttgatattaatcttaattact 560

                                                                       
Query: 359 aatattaactttcatatggtgagtacagtgtgtgtgtgtctatgtgtgtgtggtatgtgt 418
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 561 aatattaactttcatatggtgagtacagtgtgtgtgt--ctatgtgtgtgtggtatgtgt 618

                           
Query: 419 gtatgtatgtgtatat 434
           ||||||||||||||||
Sbjct: 619 gtatgtatgtgtatat 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 836
Length adjustment: 9
Effective length of query: 425
Effective length of database: 827
Effective search space:   351475
Effective search space used:   351475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)