BAC Information

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BAC

Clone NameMSMg01-153P13
Chromosome17 (Build37)
Map Location 43,200,020 - 43,200,466
singlet/doubletsinglet
Overlap geneTnfrsf21
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap
Downstream geneLOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153P13.T7 (MSMg01no153_p13.b1)MSMg01-153P13.TJ (MSMg01no153_p13.g1)
ACCAG355397AG355398
length748730
length of high quality
(start - end)
328 (40 - 367)509 (72 - 580)
definitionCHROMAT_FILE: MSMg01no153_p13.b1 PHD_FILE: MSMg01no153_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:28 2005CHROMAT_FILE: MSMg01no153_p13.g1 PHD_FILE: MSMg01no153_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGACCGCGGAATTCA
TCCTGTTGCCATGGAACTTACCTTTTGAATCATTTTTGATCCCCTTCCTC
TTCCCAACCAGTCCCCCTTGTCTGTTTTTATGATCCCAAAGTTTAATTAG
GGATGCTTACAAGAACATGGGTTAGGGACTATGTAAAAGCACATAGCACA
TGGTCAGAGGCTATGCCACTGAAGACAATATCCTTCTTTCTCTAGCAACC
ACTGATTGCTTTTATATCCGCAGGGAGGGATGGGTTCTCATGATCTTCTC
TGCACACTGTGGCTTATTATTGATGAACCCAATCTTGTGCTGAAACCCAT
AGTTTCCAAGACTTCAATAGTGCAATGGCCATGGAATATCCAGGAGGAAG
TCTTCTCCAGACATCTTCTGCCTCCTACAGTTTTTCTGACCCTCTTCCTT
GATGATTCCTGAGTCTCAGACATCCACCTGCCTCTGCCTTCCAGGTGCTG
GGATTAAAAGAGTGTGCCACCACAGTCTGGCTCAGAAGATTCTTTTCAGA
AGCTATTACTCATTTATTTATTTATCTATTTATTCATTTATTCTTCACGC
TTGATGCTCTCTATGATTAATTGCATCCCACGCTTCTCCCACATTGAAAT
ATTCTTTTTCTTCCCTCTGGCAGTAGCTCGCTTTTCTTACATATATCCCC
TACTTTTTCCTTACTGCCCCTCTTTATGCCCCTATCTCTTTTTTCTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTACCCTGCCCCAAGATTTAATATCCAC
TAGTCCCCCTCATCCATAGGATGCAATCTGGGACTCTCCATAGATGCTTA
AAAACATAGAGAGTGCCTAACCTTGTAATCTGATGCCTCTCCAATCTTAA
CTGGCACCTATCACACATTGTCGTCCATACCTTCTAGTTTGAGGTACCGA
CAAAACCAACATGCATTCCTTTTTCCTTCACAATTGAAAAGAGGGTTCAT
TTTTACTGTGTCAACAGACCATATACCCAACTATTTCAGCCCAAGATAAT
CACTCCTTAAGAACATCTAACTTAACAGGGCACAATCAATCGCACTTGCA
ACCTCAAAACACAGAAGGTAGCGGCTGGGGTGTGGGGGTGTGAACATATC
CTCAGTTATAGGAGTTTGCTTTAAGTTGAGAAGTCTACCTTTTCACTTAA
AGGGAGCACTTCATGGCTTCCTTTTGACTTATTCGAACAGCTGGCCTTGT
TACCTCAGCAGCCCAAGAGCACTGCTAAGTGAAATTGATTATCTTAACCT
GTTAACTAGGACAGCTAGCCACTGTGCGGTTATCGAGAAGGTAGGGTGCC
CCGGCCGAGCACAGTGGGCATAGGTATGGATACTTCTGGTTACAATGAAC
TGGATTCTAAAGAGACTTCATCCAATTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_p13.g1 MSMg01no153_p13.g1 CHROMAT_FILE:
MSMg01no153_p13.g1 PHD_FILE: MSMg01no153_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:28 2005
         (509 letters)



>mm_chr17_43199634_43200542
          Length = 909

 Score =  772 bits (399), Expect = 0.0
 Identities = 435/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaccctgccccaagatttaatatccactagtccccctcatccataggatgcaatctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 833 tttaccctgccccaagatttaatatccactagtccccctcatccataggatgcaatccgg 774

                                                                       
Query: 61  gactctccatagatgcttaaaaacatagagagtgcctaaccttgtaatctgatgcctctc 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 773 gactctccatagatgcttaaaaacatagagaatgcctaaccttgtaatctgatgcctctc 714

                                                                       
Query: 121 caatcttaactggcacctatcacacattgtcgtccataccttctagtttgaggtaccgac 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 713 caatcttaactggcacctatcacacattgtcatccataccttctagtttgaggtaccgac 654

                                                                       
Query: 181 aaaaccaacatgcattcctttttccttcacaattgaaaagagggttcatttttactgtgt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 653 aaaaccaacatgcattcctttttccttcacaattgaagagagggttcatttttactgtgt 594

                                                                       
Query: 241 caacagaccatatacccaactatttcagcccaagataatcactccttaagaacatctaac 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 593 caacagaccatatacccaactatttcggcccaagataatcactccttaagaacatctaac 534

                                                                       
Query: 301 ttaacagggcacaatcaatcgcacttgcaacctcaaaacacagaaggtagcggctggggt 360
           ||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| |||
Sbjct: 533 ttaacagggcacaatcaatcgtacttgaaacctcaatacacagaaggtagcagctgcggt 474

                                                                       
Query: 361 gtgggggtgtgaacatatcctcagttataggagtttgctttaagttgagaagtctacctt 420
           ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 473 gtgggggtgtgaacacatcctcagttataggagttagctttaagttgagaagtctacctt 414

                                      
Query: 421 ttcacttaaagggagcacttcatggct 447
           |||||||||||||||||||||||||||
Sbjct: 413 ttcacttaaagggagcacttcatggct 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)