BAC Information

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BAC

Clone NameMSMg01-155G16
Chromosome17 (Build37)
Map Location 4,458,801 - 4,502,421
singlet/doubletdoublet
Overlap genenone
Upstream geneTiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3, 4930470H14Rik
Downstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155G16.T7 (MSMg01no155_g16.b1)MSMg01-155G16.TJ (MSMg01no155_g16.g1)
ACCAG356431AG356432
length733732
length of high quality
(start - end)
620 (69 - 688)657 (74 - 730)
definitionCHROMAT_FILE: MSMg01no155_g16.b1 PHD_FILE: MSMg01no155_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:19 2005CHROMAT_FILE: MSMg01no155_g16.g1 PHD_FILE: MSMg01no155_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,501,802 - 4,502,421)(4,458,801 - 4,459,457)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGG
ATTCTATCCATACTCTAGAACTGAACCACAAGCTCCTTGACCTTGCTATT
TCTTACTTTCTACTCTCTGGTAAAATGGGATGTCATCACCTGCTACCTAG
GGGCTGTTGCTGAGTCTGCAAAACACCAGATTTAATTCCTAGAAGTGGAA
TAACATGGGTTATAATAACTGTGAATATTATTTTGAAATACATGTTCAAG
AAGATGACAGACATGAGAAATATAAAACAGAGGTACAAACAATAATTGCA
TGTCTGGTTCAGCGTGGTGGGAACAATGAGTGGCATGTTCAGATGTGACG
TTCTGAATTTGACAAGGTTTCAATTAGTGATTTTTCTGAGTCTCCAGCAA
AGTTTAGATATCTGTCAGGAGCAAGCCTGACAGGGTTCCAGCGTCAAATC
ACTATAGGGGCCACTGGCTAGAAGATTCAACAGATTCTGTCACTTGGTGA
AGTCTCAAGACCTTTTAGTGACACCTCTGAACTGTCCCCAGGGATGGCTC
AGCATGCACCCTGTGCTGAACACACTTGCTCTCCAGGGTCCTGCATTGCC
CTCCTCTATCTGAGGCTAGGGCTCACTCAAGGACAGGGAGTGAGGTCTTG
TTTTGTAGGGTGAGCAGCTAGGCTTAAGCGCATACAGCTGGTAACTGTGA
GAAGCTTTGGAGGAGCAGTGTGCCATCACGCGT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGAGGAGACAATAACCGCCGTGGTC
AGTACCCATCAGTCAGGAGGCCAAGTAAGTCTTAATGGCTCAAACACATT
TACATGATGCATCTTAATGATCTTGTGGTATATAAAAATAATTTAATAAT
AAGGTATAGAAATATCCTTTCTATTTTAAATACACACACATGCATGCATT
CACACACACACACACACACATGCACACCCACAGGCATAATACATCGACTT
CCAAACTCAGTATGAACACTCTTAGGCTGTAATTAAATAAAAAGTAACAT
CCGCATGGCTGATGTCGACATTAAGAGCCCTCTGTCAATCCTGATCAGAT
CATATAGAAAACAGCCGGAAGGGTACCTGGAAGCAAAGACAGACCTAAAC
CATGTAACTCTTTTAGGAACTGGGATGATGTCCACAAAAACACACAAGAA
ACAGGTACCATTTTCTTTCACACAGCCTCAAAGTATATAAGTCTGGACCT
CTCCCTTTGGTCACCACCCACCGTCTCAGACAAACTTGCTACCTTAGGGA
GTCTTTTCTATTGTAATCTTATTCTGGCCATTCAGTACAATTCTGGGAAC
TAAAATATTTTTGTCCTGGAGAAGATAGTGTGAGGTTTTTGAATGGCATC
AATGTCTTATTCTGCTAACAAAATTAAACGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_g16.b1 MSMg01no155_g16.b1 CHROMAT_FILE:
MSMg01no155_g16.b1 PHD_FILE: MSMg01no155_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:19 2005
         (620 letters)



>mm_chr17_4501602_4502621
          Length = 1020

 Score = 1183 bits (612), Expect = 0.0
 Identities = 618/620 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgaaccacaagctccttgaccttgctatttcttactttctactctctggtaaaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 aactgaaccacaagctccttgaccttgctatttcttactttctactctctggtaaaatgg 761

                                                                       
Query: 61  gatgtcatcacctgctacctaggggctgttgctgagtctgcaaaacaccagatttaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gatgtcatcacctgctacctaggggctgttgctgagtctgcaaaacaccagatttaattc 701

                                                                       
Query: 121 ctagaagtggaataacatgggttataataactgtgaatattattttgaaatacatgttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ctagaagtggaataacatgggttataataactgtgaatattattttgaaatacatgttca 641

                                                                       
Query: 181 agaagatgacagacatgagaaatataaaacagaggtacaaacaataattgcatgtctggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 agaagatgacagacatgagaaatataaaacagaggtacaaacaataattgcatgtctggt 581

                                                                       
Query: 241 tcagcgtggtgggaacaatgagtggcatgttcagatgtgacgttctgaatttgacaaggt 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 580 tcagcgtggtgggaacaatgagtggcatgttcagatgtgatgttctgaatttgacaaggt 521

                                                                       
Query: 301 ttcaattagtgatttttctgagtctccagcaaagtttagatatctgtcaggagcaagcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttcaattagtgatttttctgagtctccagcaaagtttagatatctgtcaggagcaagcct 461

                                                                       
Query: 361 gacagggttccagcgtcaaatcactataggggccactggctagaagattcaacagattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gacagggttccagcgtcaaatcactataggggccactggctagaagattcaacagattct 401

                                                                       
Query: 421 gtcacttggtgaagtctcaagaccttttagtgacacctctgaactgtccccagggatggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtcacttggtgaagtctcaagaccttttagtgacacctctgaactgtccccagggatggc 341

                                                                       
Query: 481 tcagcatgcaccctgtgctgaacacacttgctctccagggtcctgcattgccctcctcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcagcatgcaccctgtgctgaacacacttgctctccagggtcctgcattgccctcctcta 281

                                                                       
Query: 541 tctgaggctagggctcactcaaggacagggagtgaggtcttgttttgtagggtgagcagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tctgaggctagggctcactcaaggacagggagtgaggtcttgttttgtagggtgagcagc 221

                               
Query: 601 taggcttaagcgcatacagc 620
           |||||||||| |||||||||
Sbjct: 220 taggcttaagtgcatacagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_g16.g1 MSMg01no155_g16.g1 CHROMAT_FILE:
MSMg01no155_g16.g1 PHD_FILE: MSMg01no155_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:19 2005
         (657 letters)



>mm_chr17_4458601_4459657
          Length = 1057

 Score = 1255 bits (649), Expect = 0.0
 Identities = 655/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagaggagacaataaccgccgtggtcagtacccatcagtcaggaggccaagtaagtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaggagacaataaccgccgtggtcagtacccatcagtcaggaggccaagtaagtctt 260

                                                                       
Query: 61  aatggctcaaacacatttacatgatgcatcttaatgatcttgtggtatataaaaataatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 261 aatggctcaaacacatttacatgatgcatcttaatgatcttgtggtatgcaaaaataatt 320

                                                                       
Query: 121 taataataaggtatagaaatatcctttctattttaaatacacacacatgcatgcattcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taataataaggtatagaaatatcctttctattttaaatacacacacatgcatgcattcac 380

                                                                       
Query: 181 acacacacacacacacatgcacacccacaggcataatacatcgacttccaaactcagtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacacacacacacacatgcacacccacaggcataatacatcgacttccaaactcagtat 440

                                                                       
Query: 241 gaacactcttaggctgtaattaaataaaaagtaacatccgcatggctgatgtcgacatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacactcttaggctgtaattaaataaaaagtaacatccgcatggctgatgtcgacatta 500

                                                                       
Query: 301 agagccctctgtcaatcctgatcagatcatatagaaaacagccggaagggtacctggaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagccctctgtcaatcctgatcagatcatatagaaaacagccggaagggtacctggaag 560

                                                                       
Query: 361 caaagacagacctaaaccatgtaactcttttaggaactgggatgatgtccacaaaaacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaagacagacctaaaccatgtaactcttttaggaactgggatgatgtccacaaaaacac 620

                                                                       
Query: 421 acaagaaacaggtaccattttctttcacacagcctcaaagtatataagtctggacctctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaagaaacaggtaccattttctttcacacagcctcaaagtatataagtctggacctctc 680

                                                                       
Query: 481 cctttggtcaccacccaccgtctcagacaaacttgctaccttagggagtcttttctattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctttggtcaccacccaccgtctcagacaaacttgctaccttagggagtcttttctattg 740

                                                                       
Query: 541 taatcttattctggccattcagtacaattctgggaactaaaatatttttgtcctggagaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taatcttattctggccattcagtacaattctgggaactaaaatatttttgtcctggagaa 800

                                                                    
Query: 601 gatagtgtgaggtttttgaatggcatcaatgtcttattctgctaacaaaattaaacg 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatagtgtgaggtttttgaatggcatcaatgtcttattctgctaacaaaattaaacg 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)