BAC Information

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BAC

Clone NameMSMg01-155H19
Chromosome17 (Build37)
Map Location 69,017,215 - 69,017,609
singlet/doubletsinglet
Overlap genenone
Upstream geneLama1, Arhgap28, D930040M24Rik
Downstream geneEG622645, Epb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155H19.T7 (MSMg01no155_h19.b1)MSMg01-155H19.TJ (MSMg01no155_h19.g1)
ACCAG356481AG356482
length824748
length of high quality
(start - end)
181 (137 - 317)395 (79 - 473)
definitionCHROMAT_FILE: MSMg01no155_h19.b1 PHD_FILE: MSMg01no155_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:24 2005CHROMAT_FILE: MSMg01no155_h19.g1 PHD_FILE: MSMg01no155_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATAGTGTGTAGCCTAGTTTACATTTCCAGGTCTTTGGCTTCAGAAT
TGATTTTTTTTTTTTTTGGTTCTGAGGCCACTGGTCTTGAGTTTGAATCT
GTACTCACTAATAAGTGGATATTAGCAAAAAAAAAAAAAAAAGTGTACTG
AATACCCAAGATCCAGTTCACAGAACTCAAAAAGCTCAACAAGCTGAAGT
GCCCAAGTGAGGAAGTCTCAGTCACACTTGGGAGAGAGAAGAAAGCAATC
ATAAGTGAGGGAGGGAGGAAAGGAGGGACCTAGGAGGGAAAGTGCACAGG
GCCCTGCTTTTTCTTCACTCCCCCCCCCCCCCCCTTCCCTCCCCTTCCCC
TCACCTTCCCCCCCCCCCCCCACCCCTCTACACATCCTTTCCCCATTCCC
CTCTCTCACCTCCCTTCCCCCCCTCTCCTCTTCTCCCCCTATCACCCCCC
TTCCCTTTTTCCTCCCCCCACCTCTTTTCTCTTCCTCCCATTTCCTCTCC
CCCTCCCCATTCCTCTTCCTCCTCCCCTTATTCTTTCTTTATTCCCCTAC
CCCCCTTTCCTCCTCCTCCACCTCCTTTACCTCTTCCCCCTTTTCTTCCT
CTCCCCTCACCTCTCTTTCACTCTTCCCCACCTCTTCCCCCCACCCCCCT
CACCCTATACTCTCTTTACAATATACTCTTTCTCCTTTTCTAACCACCCC
CCTCTCCCCCCCTTTTTACCTCATTCTCACCCCTACCCCTCCCTTCTACC
TATCCCCCTCCCCCCCTCTTTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACTTTCAAGTATATGTTCAT
GAGCACAAGGCTACTTCTTGGTGGCATGCTCAGTGGCCTGCATTTGCATC
CATTGTTTAGCAGCCTTGACGCTGAGTGACTGGAGAGAGGCATAGTATTA
GTGTGGTGAGCCTCATGGTGTCAGATGTTGTTAAGCAATACACACTTAAA
ACTTCAATGGATGTCGAAATAGTCAGGTATTTTCTGTGAGGAATTCATTC
ATCCAAAGCGTAGAATCCCTTAAAGCCCCCAAGAACCCTGGGAAATCCCT
GCGATGTTGAGTGGCTACAATGACCCCTCTTTATCTAGGGGTAATATAGC
TTTCATTGAGAATGGGAGCGATGCTAGCCCAATGGATGGACCTGGAGGGC
ATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCCCACAATATGTA
CTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAA
GATACAATTTCCTAAACCCATGAAACTCAAGAAAAATGAAGACTGAAGTG
TGGACCCTATGTCCCTCCTTAGAAGTGGTAACAAAACCCCCCTCTGCAGG
AGCTCTCGAAACCATGTTTGCACCTGACATGACACCGAGTCCCATGCACA
GACTTCCCTTTCTCCCCTATCCACTCCCTCATCTTTCTCTACATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_h19.g1 MSMg01no155_h19.g1 CHROMAT_FILE:
MSMg01no155_h19.g1 PHD_FILE: MSMg01no155_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:24 2005
         (395 letters)



>mm_chr17_69017015_69017809
          Length = 795

 Score =  748 bits (387), Expect = 0.0
 Identities = 393/395 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttactttcaagtatatgttcatgagcacaaggctacttcttggtggcatgctcagtggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttactttcaagtatatgttcatgagcacaaggctacttcttggtggcatgctcagtggcc 260

                                                                       
Query: 61  tgcatttgcatccattgtttagcagccttgacgctgagtgactggagagaggcatagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatttgcatccattgtttagcagccttgacgctgagtgactggagagaggcatagtat 320

                                                                       
Query: 121 tagtgtggtgagcctcatggtgtcagatgttgttaagcaatacacacttaaaacttcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtgtggtgagcctcatggtgtcagatgttgttaagcaatacacacttaaaacttcaat 380

                                                                       
Query: 181 ggatgtcgaaatagtcaggtattttctgtgaggaattcattcatccaaagcgtagaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatgtcgaaatagtcaggtattttctgtgaggaattcattcatccaaagcgtagaatcc 440

                                                                       
Query: 241 cttaaagcccccaagaaccctgggaaatccctgcgatgttgagtggctacaatgacccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttaaagcccccaagaaccctgggaaatccctgcgatgttgagtggctacaatgacccct 500

                                                                       
Query: 301 ctttatctaggggtaatatagctttcattgagaatgggagcgatgctagcccaatggatg 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 501 ctttatctaggggtaatatagctttcattgagaatgggagtgatgctagccaaatggatg 560

                                              
Query: 361 gacctggagggcatcatcctgagtgaggtaacaca 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 561 gacctggagggcatcatcctgagtgaggtaacaca 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)