BAC Information

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BAC

Clone NameMSMg01-156H18
Chromosome17 (Build37)
Map Location 79,144,223 - 79,281,610
singlet/doubletdoublet
Overlap geneHeatr5b, 2310002B06Rik, EG625054, Eif2ak2
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn
Downstream gene2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156H18.T7 (MSMg01no156_h18.b1)MSMg01-156H18.TJ (MSMg01no156_h18.g1)
ACCAG357215AG357216
length746757
length of high quality
(start - end)
315 (46 - 360)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no156_h18.b1 PHD_FILE: MSMg01no156_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:37 2005CHROMAT_FILE: MSMg01no156_h18.g1 PHD_FILE: MSMg01no156_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,281,300 - 79,281,610)(79,144,223 - 79,144,511)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCGCCAAGACTTTGTGCTGCACAGTCATGGCATTCCAATTAGCT
GTCCTTTGTGACAAGCGGGTCCTGCTCCATCCTCCACCAGCCGCTATGGT
CAGGCAACCCCCCCCCCCGCGCCTCCCCCTCCCCTTCCCCCTTCTTCTCC
CAACTCCCCCGCCCAGTGCCCACCACTTTCAGACTTACTTGGTGGTTCTG
GGCCACAGCCAAATACCCTCCAACTCCTGCCTTCATGCTGCCTGTTTCTA
CTTCCTGGAAAGCCCTTTCCACCTCACCCCACCCCCAAGTGACTTCCTGG
GCAGATCTGTCTATTCTTTCCTCCCCACCCACCCAATGATATGAATTACC
TTCCCTAAGCTAGAAACCCCACTCTGCCAACATAACCAGCGCCCCCCGTC
CCCTGCCCCATATTTTTCTCAATCTTCCAACTAGTACTTAGTACTAGAAT
TAGTCTTTTTCCTTCTACCAGTATTATCCCAAGAGCAGTTTTCATTGGCT
TGTATAAGCCTAGTACCTGATCCCTGACAGGTGCTCGTTCCATGTATGCC
ACGTGGATCGCAATTCATAAATAACCTTGATTTCTAGAGAAACGGGACTC
CCTGTTGCACCTTTATTACCAACCGTGTCTTGCCCCCTGGAGCTCAAGAC
ACTCCTCATGTTAGAGCGCGCGCTCGCTTATCAGCTTTGCCCGTTG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCATCATTGCTGGGAAGTGAACTCAG
GACCTCTGGAAGATCTGCCAGTGCTCTTAACCACTGAGCCATCTATTAAG
CTCCTTCTTTTAAGTTAAAAAAATAAAAGGAGAAAAGAAGAAGAAACATG
AAGTGGTAGATGTTAAGCTAGAGATAGATTAGTGGTGGAGAGCTTGAATG
TGTTCATCCCCAGTACAGCTATCCATAAATATGCACACATTATATATGTA
TATGTATTATGTTGCAGGATATATGATCACACTGTGAACCCCAGACTGTG
CTGTTACTGGAAATTTTTATTTGCCCCCCCCGCCCGCGGTTCAGCCCTTA
GCACACACCTTTAATGCCTCCCCCCACAATACAAAAACATCCTCAACAAA
CACCCTTAATGAAGATAAAGTTAAGTTTCTAGAAGGAAGCACATAAGAGA
GAGGGTGCTTACGAGAGAGCAGTGCATAGAGGATAGAGATTGTTTCATCA
CAACAATTGTACAGAGACAGGTTTCAGGTAGAGAACTGGCTAAATCCAGG
TGAAGACCGATCGAGCCAGACCATGGAGAAAGAGATCATTACCCACAGAT
TGCCGCACGGCATTACGATGTCTACCTTATCCACTCCCCCCTCAGTTTTC
ATCACTTTTCCTTGTTCCACCCACCATTGCAGCCCATTTTTTTCCCCCCT
ATTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_h18.b1 MSMg01no156_h18.b1 CHROMAT_FILE:
MSMg01no156_h18.b1 PHD_FILE: MSMg01no156_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:37 2005
         (315 letters)



>mm_chr17_79281299_79282013
          Length = 715

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcgccaagactttgtgctgcacagtcatggcattccaattagctgtcctttgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaattctgcgccaagactttgtgctgcacagtcatggcattccaattagctgtcctttgt 253

                                                                       
Query: 65  gacaagcgggtcctgctccatcctccaccagccgctatggtcaggcaacccccccccccg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gacaagcgggtcctgctccatcctccaccagccgctatggtcaggcaacccccccccccg 193

                                                                       
Query: 125 cgcctccccctccccttcccccttcttctcccaactcccccgcccagtgcccaccacttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cgcctccccctccccttcccccttcttctcccaactcccccgcccagtgcccaccacttt 133

                                                                       
Query: 185 cagacttacttggtggttctgggccacagccaaataccctccaactcctgccttcatgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cagacttacttggtggttctgggccacagccaaataccctccaactcctgccttcatgct 73

                                                                       
Query: 245 gcctgtttctacttcctggaaagccctttccacctcaccccacccccaagtgacttcctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  gcctgtttctacttcctggaaagccctttccacctcaccccacccccaagtgacttcctg 13

                      
Query: 305 ggcagatctgt 315
           |||||||||||
Sbjct: 12  ggcagatctgt 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no156_h18.g1 MSMg01no156_h18.g1 CHROMAT_FILE:
MSMg01no156_h18.g1 PHD_FILE: MSMg01no156_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:37 2005
         (289 letters)



>mm_chr17_79144023_79144711
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatcattgctgggaagtgaactcaggacctctggaagatctgccagtgctcttaaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatcattgctgggaagtgaactcaggacctctggaagatctgccagtgctcttaaccac 260

                                                                       
Query: 61  tgagccatctattaagctccttcttttaagttaaaaaaataaaaggagaaaagaagaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagccatctattaagctccttcttttaagttaaaaaaataaaaggagaaaagaagaaga 320

                                                                       
Query: 121 aacatgaagtggtagatgttaagctagagatagattagtggtggagagcttgaatgtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatgaagtggtagatgttaagctagagatagattagtggtggagagcttgaatgtgtt 380

                                                                       
Query: 181 catccccagtacagctatccataaatatgcacacattatatatgtatatgtattatgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catccccagtacagctatccataaatatgcacacattatatatgtatatgtattatgttg 440

                                                            
Query: 241 caggatatatgatcacactgtgaaccccagactgtgctgttactggaaa 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggatatatgatcacactgtgaaccccagactgtgctgttactggaaa 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)