Query= MSMg01no157_a23.b1 MSMg01no157_a23.b1 CHROMAT_FILE:
MSMg01no157_a23.b1 PHD_FILE: MSMg01no157_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:20 2005
(630 letters)
>mm_chr17_87239573_87240602
Length = 1030
Score = 1112 bits (575), Expect = 0.0
Identities = 618/643 (96%), Gaps = 17/643 (2%)
Strand = Plus / Plus
Query: 5 ggaattccaccaaaagccttacactaaggcaacaagtccc-----------------tga 47
|||||||||||||||||| | |||||||||||||||||| |||
Sbjct: 188 ggaattccaccaaaagccagagactaaggcaacaagtcccacgagtcgaaatgaccctga 247
Query: 48 gagagagccctgaggagatccacctcacacctagtcggcctctcctctgggggcagcata 107
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 248 gagagagccctgaggagatccacctcacacctagtcggtctctcctctgggggcagcata 307
Query: 108 ctcgttccctgggacaggcacttgatgcaacgtttctcttacatcaagagctaacttgca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 308 ctcgttccctgggacaggcacttgatgcaacgtttctcttacatcaagagctaacgtgca 367
Query: 168 gagaaatacacctttaggacagccccacgaggcacagccagatgccaactgaagatggac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gagaaatacacctttaggacagccccacgaggcacagccagatgccaactgaagatggac 427
Query: 228 aggtgacggagtccctgggagaagtctgattcgtcacatctctcccttaccatcaccctc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aggtgacggagtccctgggagaagtctgattcgtcacatctctcccttaccatcaccctc 487
Query: 288 agggcatgtggtctaaattcaggggtggatctgtgacacaaatgacaacatacctcaatg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agggcatgtggtctaaattcaggggtggatctgtgacacaaatgacaacatacctcaatg 547
Query: 348 gcttctctgtcaaaggtctctactggatcgaactacaggagggacctcaagaaaatttca 407
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 548 gcttctctgtcaaaggtctctactggatcgaattatgggagggacctcaagaaaatttca 607
Query: 408 aaggaggaaaattcttcagacgaagctcacccctgtccttcaaagtgccagcctctccca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaggaggaaaattcttcagacgaagctcacccctgtccttcaaagtgccagcctctccca 667
Query: 468 gaacagatatggtgaacatggtctctattaaggacaaccagaggacaattaaatatagtg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaacagatatggtgaacatggtctctattaaggacaaccagaggacaattaaatatagtg 727
Query: 528 tcaccctttaggatgcaacaccagaaatgaagatacttgcaaaaaccaagaaaatctgaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tcaccctttaggatgcaacaccagaaatgaagatacttgcaaaaaccaagaaaatctgaa 787
Query: 588 caaagtaagggctttcattcccaaaaatgtgccatttccttcc 630
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 caaagtaagggctttcattcccaaaaatgtgccatttccttcc 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_a23.g1 MSMg01no157_a23.g1 CHROMAT_FILE:
MSMg01no157_a23.g1 PHD_FILE: MSMg01no157_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:20 2005
(595 letters)
>mm_chr17_87376758_87377751
Length = 994
Score = 1104 bits (571), Expect = 0.0
Identities = 589/595 (98%), Gaps = 1/595 (0%)
Strand = Plus / Minus
Query: 1 caaaatgaaaagatttagacaggtcatgaagtgagtacaggtggtggtgcccccagagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 958 caaaatgaaaagatttagacaggtcatgaagtgagtacaggtggtggtgccccgagagaa 899
Query: 61 cacatgtcactgtctggagacattctgattgccagagctggaggagggtactgttagcac 120
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 898 cacatgtcactgtctggagacattttgattgccacagctggaggagggtactgttagcac 839
Query: 121 atgtggggaggacagcagacatgggtggctcttcctcacatcccagagtgcacaagacag 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 atgtggggaggacaacagacatgggtggctcttcctcacatcccagagtgcacaagacag 779
Query: 181 cctcctcccaataaagagcaatagcccagcccacacataaacaaccccctcacgtaccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cctcctcccaataaagagcaatagcccagcccacacataaacaaccccctcacgtaccca 719
Query: 241 tctcctatgtgctaaggagtagaaccttcagaaattccaagttagacttctttagtggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tctcctatgtgctaaggagtagaaccttcagaaattccaagttagacttctttagtggta 659
Query: 301 ggggttgagatgaaaggctaaaaacttctaaaaaacaaagatacaagaaagcaaggtcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ggggttgagatgaaaggctaaaaacttctaaaaaacaaagatacaagaaagcaaggtcca 599
Query: 361 ttcaaaggactaagctgtatctacagcaagcaccccacagagacacagacatcgattggc 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 598 ttcaaaggactaagctgtatctacagccagcaccccacagagacacagacatcgattggc 539
Query: 421 ttgatggaagaaaagcttccttaactagactcagtcactcccaaaggcacacataccaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttgatggaagaaaagcttccttaactagactcagtcactcccaaaggcacacataccaca 479
Query: 481 gtcaactaaactcagtcgctctgtagcataatactcctggactttcaaacacagggaagt 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtc-actaaactcagtcgctctgtagcataatactcctggactttcaaacacagggaagt 420
Query: 541 gtggggcctaatatactgtatttttcctatatacacatacctatgataaaattca 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtggggcctaatatactgtatttttcctatatacacatacctatgataaaattca 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 994
Length adjustment: 10
Effective length of query: 585
Effective length of database: 984
Effective search space: 575640
Effective search space used: 575640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
