Query= MSMg01no157_l24.b1 MSMg01no157_l24.b1 CHROMAT_FILE:
MSMg01no157_l24.b1 PHD_FILE: MSMg01no157_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:09 2005
(322 letters)
>mm_chr17_21425213_21425934
Length = 722
Score = 596 bits (308), Expect = e-175
Identities = 317/320 (99%), Gaps = 1/320 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacctctatgattatgaaagaatca-catggacactgatctcttcagtgctggg 62
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 203 ggaattcacctctatgattatgaaagaatcaacatggacactgatctcttcagtgctggg 262
Query: 63 aagatggatcagcagttaggaatgtgaactcctctcatagagtcaagagttgaagtgaaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagatggatcagcagttaggaatgtgaactcctctcatagagtcaagagttgaagtgaaa 322
Query: 123 atacctccacacattagctaacctctgcatataactccagattcaagggtgccatgtcct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atacctccacacattagctaacctctgcatataactccagattcaagggtgccatgtcct 382
Query: 183 cttctggaatccccaggcactgaacacatgagtacaaagttcttcgctttcttaatcaac 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 383 cttctggaatccccaggcactgaacacatgagtacaatgttcttcgctttcttaatcaac 442
Query: 243 atgctctgtgatatgggaactttctcagtgtctccccagaaaccatatattggacacttg 302
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 443 atgctctgtgatatgggaactttctcagtgtctccccagaaactatatattggacacttg 502
Query: 303 gtgccatctggcatgttatc 322
||||||||||||||||||||
Sbjct: 503 gtgccatctggcatgttatc 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_l24.g1 MSMg01no157_l24.g1 CHROMAT_FILE:
MSMg01no157_l24.g1 PHD_FILE: MSMg01no157_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:09 2005
(293 letters)
>mm_chr17_21568549_21569242
Length = 694
Score = 561 bits (290), Expect = e-164
Identities = 293/294 (99%), Gaps = 1/294 (0%)
Strand = Plus / Minus
Query: 1 tttctatttggaactgcatatagaaaaaca-tttcagttctttctttctctttcacttga 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 494 tttctatttggaactgcatatagaaaaacattttcagttctttctttctctttcacttga 435
Query: 60 agccatcactgttctcccgctcattcttttgtccaccctgataatggctaccatatcttc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agccatcactgttctcccgctcattcttttgtccaccctgataatggctaccatatcttc 375
Query: 120 tccccatatcagggtactcacgtttgctccagacaggtgaccagatataccttgaatata 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tccccatatcagggtactcacgtttgctccagacaggtgaccagatataccttgaatata 315
Query: 180 ataatccatgtgttctgtgagatagcccaggacccatgcaagaattcttagaaagaacat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ataatccatgtgttctgtgagatagcccaggacccatgcaagaattcttagaaagaacat 255
Query: 240 acacatctaacacagtactgtgttcagtgtatgaagagaagataaaatagagca 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 acacatctaacacagtactgtgttcagtgtatgaagagaagataaaatagagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space: 194540
Effective search space used: 194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
