BAC Information

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BAC

Clone NameMSMg01-158B18
Chromosome17 (Build37)
Map Location 45,672,268 - 45,672,479
singlet/doubletsinglet
Overlap geneTcte1
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2
Downstream geneGm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158B18.T7 (MSMg01no158_b18.b1)MSMg01-158B18.TJ (MSMg01no158_b18.g1)
ACCAG358412AG358413
length741779
length of high quality
(start - end)
312 (44 - 355)213 (74 - 286)
definitionCHROMAT_FILE: MSMg01no158_b18.b1 PHD_FILE: MSMg01no158_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:35 2005CHROMAT_FILE: MSMg01no158_b18.g1 PHD_FILE: MSMg01no158_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAAGTGAGGAATACCGAAGGGCTGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCTTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAACAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGA
TTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGATTCCTTAGAA
AATTGGACATAGTACTATTCTGAAGATCCAGCAATACCTCTCCTGGGCAT
ATGTTTTTATTGTTACCACCCCCCCCTGCTCCACTATGTTCATAGCAGCC
TTATTTATACCCCCCACCAAAAAGAAAGAACCCAGATGCCCCTCAACAGA
GGAATGGGTACAAAAAATGTGGTACATTTACACAATGGAGTACTCCTCAG
CTATTAAAAACAATGAATTTATGAAATTCTTGCGCACATGGATGGATCCT
TAGTGAGGTAACCCACTCACAAAAGAACTCACATGATATGCACTCACTGA
TAAGTGGATATTAGCCCAGAAACTTATAATACTTCTGATACAAGGTTGCA
TCACCGAAGAAACTCAAAAAGAATGACTACCATAGTGTGAATACTTCATT
CCTCCTTAGAATATGGAACATAATAACCTTGCCTCTTGTTC
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGCCTGCCTAAGGTATGAGACCCTG
CCTCAACTAAGTTTTAAAACAAAACAAAACAAAAACCCAACCAACTATCT
AAACAATCCCTTCCTCTACTCATGAATGCAAAGGAAATGAGAGAAGATGA
TAGAAGGAGAGGAAGAGGCAGGGAGAAGCAATCCCAAAGACAATGAGAAA
GGAGGCAAGTGAGTTGGGGGGCGGTGGGGGTGGGGCCCCCCCCTCTTTAC
CCTTCTTTTTCTCCTTTTTTTTTTTNCCCCCCCCCCCCCTCTCCGCCCCC
CCTCTTTTTTTTTTTCCCCCCCCCCCCCCCCTTTTTACACATCATAATAT
TTTTTTTTTTTACCCCCCCCCCTTTATAAAAAAAAAATACTAGTTTTGGC
GGTGTTACCCACAATCTACCGCATCAGCGAAATAATCACATTACTATCAC
TCTCATACTCTTTTTTTTTATTCATTATATATCTATAAAAATAATGCCCC
CCACACTCTTTCACCCCTTTTTTCCACTCTCTCTTTTCTTTTTTTAATCA
CTTTCAACTCCACTATCCAATTTTGTTATCCTTATATCCTCTATTTTTTA
CACCCCTCCACTCTTTTCCTCTCCCCACATTCTACTCTCCCACGACCATT
CTTTTTTCTCTTCTCATCCCAAAACACTTTTTTTTTTGTTTACCTCCCCT
ACATGCTCTGTTTTTTTCTCCCTCCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_b18.g1 MSMg01no158_b18.g1 CHROMAT_FILE:
MSMg01no158_b18.g1 PHD_FILE: MSMg01no158_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:35 2005
         (213 letters)



>mm_chr17_45672068_45672680
          Length = 613

 Score =  387 bits (200), Expect = e-112
 Identities = 209/212 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcctgcctaaggtatgagaccctgcctcaactaagttttaaaacaaaacaaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 412 caggcctgcctaaggtatgagaccctgcctcaactaagtttcaaaacaaaacaaaacaaa 353

                                                                       
Query: 61  aacccaaccaactatctaaacaatcccttcctctactcatgaatgcaaaggaaatgagag 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aacccaactaactatctaaacaatcccttcctctactcatgaatgcaaaggaaatgagag 293

                                                                       
Query: 121 aagatgatagaaggagaggaagaggcagggagaagcaatcccaaagacaatgagaaagga 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aagatggtagaaggagaggaagaggcagggagaagcaatcccaaagacaatgagaaagga 233

                                           
Query: 181 ggcaagtgagttggggggcggtgggggtgggg 212
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ggcaagtgagttggggggcggtgggggtgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)