Query= MSMg01no159_g12.b1 MSMg01no159_g12.b1 CHROMAT_FILE:
MSMg01no159_g12.b1 PHD_FILE: MSMg01no159_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:08 2005
(314 letters)
>mm_chr17_87605251_87605965
Length = 715
Score = 460 bits (238), Expect = e-134
Identities = 299/332 (90%), Gaps = 22/332 (6%)
Strand = Plus / Plus
Query: 5 gaattcttggcttccaatggatgttgtctcttgtactggggagatgggggcggtatattc 64
|||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct: 184 gaattcttggcttcggatggatgtcgtctcttgtactggggaggtgggggcagtatattc 243
Query: 65 agatgagacaaggtcatgggactgctgtgttaaacctaaggacaaaattacactcattca 124
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 244 agataagacaaggtcatgggactgctgtgttaaacctaaggacagaattacactcattca 303
Query: 125 gttaaaaaa-----acaaaaacaaacaaacaaa----------------acgctgagtac 163
||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 304 gttaaaaaacaaaaacaaaaacaaacaaacaaacaaacaaacaaacaaaacgctgagtac 363
Query: 164 ttccccttaccttttcccaggagtcgctgttctcgggaagctagtcctaagtacctgggc 223
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 364 ttccccttaccttttcccaggagtcgctgttctcgggaagctggtcctaagtacctgggc 423
Query: 224 tcagaaaaaa-gacagtgtccactaaaggcactcgacaatctaaggcacccacctcccca 282
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcagaaaaaaagacaatgtccactaaaggcactcgacaatctaaggcacccacctcccca 483
Query: 283 gccgaaacaggttgatttcaggaggactcagc 314
|| ||||||||||||||||||||||||||||
Sbjct: 484 accaaaacaggttgatttcaggaggactcagc 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space: 215330
Effective search space used: 215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_g12.g1 MSMg01no159_g12.g1 CHROMAT_FILE:
MSMg01no159_g12.g1 PHD_FILE: MSMg01no159_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:08 2005
(282 letters)
>mm_chr17_87757025_87757702
Length = 678
Score = 445 bits (230), Expect = e-129
Identities = 268/282 (95%), Gaps = 4/282 (1%)
Strand = Plus / Minus
Query: 1 accctagagtgctactcagaagagagtctgggttctgggcacacatttcccccccccccc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 351 accctagagtgctactcagaagagagtctgggttctgggcacaca-ttcccccccccccc 293
Query: 61 ccacttttcctcaaaaataccttttgtgttgcttcgttagcatctgccctctccctaccg 120
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 292 ccacttttcctcaaaaataccttttgtgttgctgcattagcatctgccctctccctaccg 233
Query: 121 gggcctcccgagctctccatctgcccatcagcctgaacttacttatttctgataggctct 180
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 232 tggcctccc---ctctccatctgcccatcagcctggacttacttatttctgataggctct 176
Query: 181 catgcagcctaggaccgcctagaactcactctagggctgggaatgcccctgagttctagg 240
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 175 catgcagcctaggaccgcctagaactcattctatggctgggaatgcccctgagttctagg 116
Query: 241 cgctttcgtcttcacccaccatgtgctgtgattacagcgtgt 282
|||||||| || |||||| || ||||||||||||||||||||
Sbjct: 115 cgctttcgcctccacccatcacgtgctgtgattacagcgtgt 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 678
Length adjustment: 9
Effective length of query: 273
Effective length of database: 669
Effective search space: 182637
Effective search space used: 182637
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
