BAC Information

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BAC

Clone NameMSMg01-159H10
Chromosome17 (Build37)
Map Location 65,835,896 - 65,836,203
singlet/doubletsinglet
Overlap geneE130009J12Rik
Upstream geneLOC100043582, Man2a1, 4930583I09Rik, LOC100043871, LOC668655
Downstream geneLOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159H10.T7 (MSMg01no159_h10.b1)MSMg01-159H10.TJ (MSMg01no159_h10.g1)
ACCAG359391AG359392
length719845
length of high quality
(start - end)
313 (46 - 358)205 (77 - 281)
definitionCHROMAT_FILE: MSMg01no159_h10.b1 PHD_FILE: MSMg01no159_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:12 2005CHROMAT_FILE: MSMg01no159_h10.g1 PHD_FILE: MSMg01no159_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGGAAATTGAAAATGATGGCCTGTGCAGAAAAACAATAATTAT
AGCTATCATCTAATTTTAATTAATCATCTTCTGGTGGGTAAGCATAACAA
TGTTCTGGGGAAAGCACTTTACTTTTTAATTATGTTTCTCATACAAACAA
GATCAGTAGCAGCCAATATACCTGAGCAGATAACCTAGACCCATATTCTT
TGCTTGAGAAAATAAATTTTCATTTCCAAAGGCCTTTTGTCCTGTGAAAA
ACATTCCTGAGATGGTTACCAGCAAGCTTTTTGGATGTTTTCTTCATAGG
TGAAATCTTTTTTAGCTCCCCCCCTGCTCCCATTTATGCTAAATCTTTAT
TCACTCCATATGGATTCAGTACAACCGAGACTACAGTGAAGTATTGAGGG
AAAAAAGATATATGGAGTAAATTCAGCTATGAGCAAGTAGCCATGACGAC
GCTGCCCGAGAGGGTGTCATTGCAGGGCATCTGCAAGAAGAGAGGCAGGA
CTAGCGAGCCTCTGTGTTGCTGTTTTAACGGTCTGCTGAGAGCTGGAGGA
GAGGACCTGGGGCGCATCTACAGGGATAGTCACATGTATGCCTAGACAAG
AGATGATGATGGCTTAGACCAGAAGAGTGGCAATGTAAGTAAAGATGATC
ATGTGGATAATGTATATGC
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGTTGTTTCATCCACGAAGCT
CCATGCCTCAACTGGTCTTCAGTCTGAGCCAGAGTCCCAAAGACATAGGT
TCTAATACCAGTGAGAGCACAGGAATAGGGCAGACAAAGCTGCCAGCAAG
GGCAAGGGCAAGGTCGGAGGCAAGCAGACAAGTTTGGAAATTTTAGGAGG
TGAGGTCAGGATGGTAGAGGTGGGGTTTGATCCCCCCCTCCTTTATTGCT
TCTTTTTCTCTGAACCCAATTTTTTTCTTCGTTTGCGGGTCATACCACCA
CCAGGAATTTTTTGAGTCCTTCCTAAAACAGAAACCCCTTATTATAGTTT
TTATTGTTTNTTTTNTGTTTTTTTTCCCCAAAAAAAAAAAAAAAAAAAAT
ACTGGGGGTGGGGGGGGGTTTTTTTATTCCTTTTTCCTCTTATAAAATTT
TATTAGGTGCTCTTTCTTGGGACTCTCGCGTACTCCCATCTTCTCTCACT
AGTTCTTTTAGCCTCTCCCGGTTGCCCACTTTCCCCATTATTCCAGACCT
GCTGCTCTCTTGTCTTAGTCCATTACCTCTCGCGTCTTAGTGTCATGTCC
TTCTATTTTTTTTATTTTCATTTCACACCATTATTATTGACGTGGCTATC
TAGTGCAGACGAAAGAGATTTCTACACCATCGTCACAACCTACAATTCTT
ACAGTCATGAGACCACACTCCGCTTGTTCCCCGTTTCTCTCGTCTTTTTC
CGTCGCCTCCTGTTCTCTCCTCTCTCCTGCTGTCTATCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_h10.b1 MSMg01no159_h10.b1 CHROMAT_FILE:
MSMg01no159_h10.b1 PHD_FILE: MSMg01no159_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:12 2005
         (313 letters)



>mm_chr17_65835692_65836404
          Length = 713

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttggaaattgaaaatgatggcctgtgcagaaaaacaataattatagctatcat 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattctttggaaattgaaaatgatggcctgtgcggaaaaacaataattatagctatcat 264

                                                                       
Query: 65  ctaattttaattaatcatcttctggtgggtaagcataacaatgttctggggaaagcactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaattttaattaatcatcttctggtgggtaagcataacaatgttctggggaaagcactt 324

                                                                       
Query: 125 tactttttaattatgtttctcatacaaacaagatcagtagcagccaatatacctgagcag 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tactttttaattatgtttctcatacaaacaagatcagtagcatccaatatacctgagcag 384

                                                                       
Query: 185 ataacctagacccatattctttgcttgagaaaataaattttcatttccaaaggccttttg 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataacctagacccacattctttgcttgagaaaataaattttcatttccaaaggccttttg 444

                                                                       
Query: 245 tcctgtgaaaaacattcctgagatggttaccagcaagctttttggatgttttcttcatag 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 tcctgtgaaaaacattcctgagatggttaccagcaggctttttggatgttttcttcatag 504

                   
Query: 305 gtgaaatc 312
           ||||||||
Sbjct: 505 gtgaaatc 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)