BAC Information

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BAC

Clone NameMSMg01-159N23
Chromosome17 (Build37)
Map Location 26,113,117 - 26,113,416
singlet/doubletsinglet
Overlap genenone
Upstream geneCramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh
Downstream gene1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159N23.T7 (MSMg01no159_n23.b1)MSMg01-159N23.TJ (MSMg01no159_n23.g1)
ACCAG359695AG359696
length738737
length of high quality
(start - end)		308 (386 - 693)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no159_n23.b1 PHD_FILE: MSMg01no159_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:40 2005CHROMAT_FILE: MSMg01no159_n23.g1 PHD_FILE: MSMg01no159_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGGGAACTTTTCAGAGGGTATGTAAGTGTTAGAGCCCCTACAGG
CATTGTTGGGGAATGGAGATTGCAGCCTGACAGTAGTCATGATCCAAAAA
CAAAAAAACAAGGTGAAGCCTGGCATGGTGGCACACGCCTTTAATCCCAG
AACTTGGGAGGCCGAGGCAGGCGGATTTCTGAGTTCCAGGACAGCCAAGG
CTATACAGAGAAACCCTGTCTCGAGGGAAAAAAAGGGGGAGGGAATTAGA
TTCAGATCTCTGCCAGTTCCCCTTCCCTCACATCCCTGCCTTCCACACTC
TCTCTCTCTCTCCCCCCTCTATTCTTTCCTGCCCAGTGATATGGAGTAAA
ACTGGTGGGGGCGCGGATAAAGGGTAGAAAAACAAAGAACCTATAAAGTA
GCAAAGAAGAAACAAAAAGAAATTAGATTCTGAGATCTTTATCTCTCTCT
TTCCTCTCTAGTCTTTCTCTCCTGTCTAGTGATAGAGGAGAAACCAAGGG
TGGGAAAAAGAAGAATTCACCAAAGTAGCAAAAACCAGATACAATTCACT
GATGCCCCAAACAAAGCCACCAGCACAGGAGCCTACTGTGTCCCATGAAG
GGGCATGTCTATACTGAGCTAGAACACAGTCCAGAGATCTTAACCAGAGC
CAAGTGCATTGTATTACTCCAGAAACTGAGGCAGGAGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGATATGTATGTGGTACACAT
GCAAGAGAACACCCGTACACAGAAAATTTTAAATTTTTTAAATATGAAAA
AGCATGTGTCCAAGTATCACTGTGCTGGTAGCACAGTCAGCTATACAGGG
GATGTGACTGAGCCTCAGAGCCTTTTATAGGGATACAGATTTTTTTTCTC
TTTTGAGATTGGGCTCCTCTGTGTAGTCCTGGCTGTCCTGGAACTCTCTC
TGTACAAGGCTGCTCTTGAACTCAGAGATCTGCCTGCCTCTGCCTCCCAA
GCACTGGCATGTGCCTTTTTTGACTACCCGCACCGATTTTGGAGAGCTGG
TCTGTGACTCGGGGCTATTCAAGCACCTTTCTTCTCTGGGTTCTCCGATC
CTAGTCCTCAAGATAAACTCCAGGAAGGGGCATCAGAGGATTGGAGGTGA
AAGGAACAGTTAAGGATTCCATCTCCCACCGGGCATGGTGGCGCATGCCT
TTAATCCCAGCACTCGGGAAGCAGAGGCAGACAGATTTCTGAGTTCAAGG
CCAGCCTGGTCTACAGGACAACCAGGGCTACACAGAGAAACCCTGTCTTC
TTGAAAAACGAAAAAAAAAAAAAAAAAAAAGGATTCCATCTCCCCAAGCC
TCGATGGNAATCAGAGCATCAGAAAGCACCTTTGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_n23.b1 MSMg01no159_n23.b1 CHROMAT_FILE:
MSMg01no159_n23.b1 PHD_FILE: MSMg01no159_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:40 2005
         (308 letters)



>mm_chr17_26112709_26113416
          Length = 708

 Score =  580 bits (300), Expect = e-170
 Identities = 300/300 (100%)
 Strand = Plus / Minus

                                                                       
Query: 9   gagtaaaactggtgggggcgcggataaagggtagaaaaacaaagaacctataaagtagca 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gagtaaaactggtgggggcgcggataaagggtagaaaaacaaagaacctataaagtagca 649

                                                                       
Query: 69  aagaagaaacaaaaagaaattagattctgagatctttatctctctctttcctctctagtc 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aagaagaaacaaaaagaaattagattctgagatctttatctctctctttcctctctagtc 589

                                                                       
Query: 129 tttctctcctgtctagtgatagaggagaaaccaagggtgggaaaaagaagaattcaccaa 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tttctctcctgtctagtgatagaggagaaaccaagggtgggaaaaagaagaattcaccaa 529

                                                                       
Query: 189 agtagcaaaaaccagatacaattcactgatgccccaaacaaagccaccagcacaggagcc 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agtagcaaaaaccagatacaattcactgatgccccaaacaaagccaccagcacaggagcc 469

                                                                       
Query: 249 tactgtgtcccatgaaggggcatgtctatactgagctagaacacagtccagagatcttaa 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tactgtgtcccatgaaggggcatgtctatactgagctagaacacagtccagagatcttaa 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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