BAC Information

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BAC

Clone NameMSMg01-159O06
Chromosome17 (Build37)
Map Location 46,639,608 - 46,639,904
singlet/doubletsinglet
Overlap geneParc
Upstream geneAars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355
Downstream geneSrf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159O06.T7 (MSMg01no159_o06.b1)MSMg01-159O06.TJ (MSMg01no159_o06.g1)
ACCAG359707AG359708
length749788
length of high quality
(start - end)
317 (48 - 364)285 (78 - 362)
definitionCHROMAT_FILE: MSMg01no159_o06.b1 PHD_FILE: MSMg01no159_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:42 2005CHROMAT_FILE: MSMg01no159_o06.g1 PHD_FILE: MSMg01no159_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGCCTCCACCCAGGTGACCAAAGAAAGCCTAGAATGAGCAAGA
TAGGGCAAGCAGGCACCAGAGCAGGCCAAGGGGTGTGGAGTGGGCCTGCC
CAACACCGTGGCTGGAGACAAACCCTGGCATCACCATGTAAAGGAAGGCC
AATAATAACACTCCTCCAGGAGGATTGCATGAAAGTTCTGGGTGAAGTAG
AGAGAGGCATTATGGATAGCAGCCCTTCTAAGAAGCCCAGCCTATCAGAA
TGTACACAGCCATCCCTCCATGTGTCTTCACCAGGTAAGCAAAGCAGCTC
GCCAGGAGAAGCGTTTTTTTACCCCCCCCCCCCCCGTACCTTCCATCATC
ATGACCGGTTGATTTTCCCACCCCGAAAAAAAAAAAATATTTCTGCTGTT
TTGTTCTGACAACCCCAATTTTAATCTTTCTGTTACACACGTCTCCCCGC
TTATTACTGCTTCTGCCTCATTACATCACACCGCTGTCATTCTATTCTTA
CCATCCCATTTCTTTCTAAAATTTACCATAGTTCTTTATTATTTTCCCTT
TACAAATCAATACCTTCTTTTTATTTTTTATTATCCACTATTTCGCATAT
AAATCTTTTTTTTTTATCAATATAAATAACATCATATTATATTTTTTATT
TATATTAATAATATATCACTATTCACCTTAAATTTTAATTATTTTTCCC
CACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACGCCCAGTCACTGCCCAACTCG
GGGCGTAGTAATGGGGTGATGGGCAAGCAACTAATCAGGTGCTGTCACGC
CACATCAGGTGCTGAAACGTCACACTGCAGGTTATATAAGCAGTGCCATT
TTCTGGGTTCGGGGTCTTCCTGTGAAGTAAGCAATAAAAGCTTTGCCATA
GAAGGATCCGGTTGTCCGAGTGAATTCTTGCCGCCGAGATACTAGCTCGG
GCGAGAAGTGGTGCCAAGAAACCCGGTAATATATCATCACCAGGCACTGA
TAGGAGACCCCCGTTTTTTTTCCCCCCCCCCCCCCCACGGAATTTTACTG
TTTCACAAGGTATTTTCTCCCCCCCCCACCAAAAAAAAAAAAAAAGAATG
TATGTCTGCACCTTTTATACTAACCTCGCTCCCCTTTTCCTTTTTTTTGT
ACCCCCGCCCCCCCCCCGACTCGTATTGACACAATGACTCCTCCTTCTTA
TTATTTCATATATACCACCCCCTCTTTATATATATCTTATAAATTTTTCT
CCATAAATTTACCCACCCCCTTTTTTTTTTTTTTTACTTCACTTTTCGCC
TCCCTATTCTCTCCTTCCTCAAATTCGATCCACTCTACCTCCCCATTTTT
TCTTTTTTCCTACTCTTTCCTCTCCTCCCCCCCCCCCAATTATCTATTTA
TTTATATTATTTTATTTCTATTTTCTTTCCCTCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_o06.b1 MSMg01no159_o06.b1 CHROMAT_FILE:
MSMg01no159_o06.b1 PHD_FILE: MSMg01no159_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:42 2005
         (317 letters)



>mm_chr17_46639494_46640210
          Length = 717

 Score =  516 bits (267), Expect = e-151
 Identities = 294/313 (93%), Gaps = 16/313 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgcctccacccaggtgaccaaagaaagcctagaatgagcaagatagggcaagc 63
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggaactctgcctccacccaggtgaccaaagaaagcctagaatgagcaagatagggcaagc 352

                                                                       
Query: 64  aggcaccagagcaggccaaggggtgtggagtgggcctgcccaacaccgtggctggagaca 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aggcaccagagcagggcaaggggtgtggagtgggcctgcccaacaccgtggctggagaca 292

                                                                       
Query: 124 aaccctggcatcaccatgtaaaggaaggccaataataacactcctccaggaggattgcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aaccctggcatcaccatgtaaaggaaggccaataataacactcctccaggaggattgcat 232

                                                                       
Query: 184 gaaagttctgggtgaagtagagagaggcattatggatagcagcccttctaagaagcccag 243
           ||||||||||||||||||||||||||||                ||||||||||||||||
Sbjct: 231 gaaagttctgggtgaagtagagagaggc----------------cttctaagaagcccag 188

                                                                       
Query: 244 cctatcagaatgtacacagccatccctccatgtgtcttcaccaggtaagcaaagcagctc 303
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 187 cctatcagaatgtacacagccatctctccatgtgtcttcaccaggtaagcaaagcagctc 128

                        
Query: 304 gccaggagaagcg 316
           |||||||||||||
Sbjct: 127 gccaggagaagcg 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)