BAC Information

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BAC

Clone NameMSMg01-160K09
Chromosome17 (Build37)
Map Location 53,198,888 - 53,199,195
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672987, EG328839, Kcnh8
Downstream geneLOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160K09.T7 (MSMg01no160_k09.b1)MSMg01-160K09.TJ (MSMg01no160_k09.g1)
ACCAG360264AG360265
length713731
length of high quality
(start - end)
324 (9 - 332)278 (77 - 354)
definitionCHROMAT_FILE: MSMg01no160_k09.b1 PHD_FILE: MSMg01no160_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:40 2005CHROMAT_FILE: MSMg01no160_k09.g1 PHD_FILE: MSMg01no160_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCCTATAGGGAGAGGATCCGCGGAATTCTGACAGAATCCATCAACTCT
GTCATTGATGAAATGGCCATTACAATCATCACTTCATGAAAGGTATCACT
TGTATGTTTTTTAACTCTAAGAGGATAATACAGACCTCCTGAAGGAATAT
GAACTCAGAGGTTCATAAGACCGTGCTTATCAATTTTGGCTGCAGAAGTT
TTTTGTATGGGAACAGGCTTCCTCTAAGTAAACTCAGAAAGACACTTGTC
TTCACCTGTCCCTGTCCCAGAAGTCCAAGAGGCAACTCATTCTGAAGGTC
ATAGGATCAAGCAATCATAACAGCTAAGAATTCTTATAAGGCCCCCTGCA
CTAGCAACTGGGAATCCTTTAAATGCCCAGGCACATACCACGAATCTAAC
TCCAGGACCTGCGTCCTGGATCCATCATCTAACAGGAGTTTAATCTTGGG
ACAGCAGGCCCTGCATCTCACGGAGAAGCACAGTAGAGCTGGCCCTGGTG
CCAGGACTATGGGCGAGCAACCCCAGAGGGTTTAAGCATAGGAGAGCTGG
CCATTCCACTCCTCTAATATGAGATGGCATGGGTGTGGAAGAGATGCCCT
ACCCTCTATCACCCCTTGTCACCTGCTTCAGTCACGGACATATTTCCTGG
GGTCATCGAATAGTAGGAATATTTGGCCTTTGTTTGTTGTTATCACCTTA
TACTGGCTTATCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTACTGCCTTAGACCATTTATGT
TATTGGCTGAAACACACACACACAGGCTCTATATTTTAATATGCATTAAA
CATGACAATAGGTGGGCAGCTGCCTAACCACCATTTTGTTAGCATCTACT
TCCCACCAATAATTTCAAGCTACTACTATTAACTTCTATGCTCCATCTTG
GTTGCTCTTAACTTCAATTAGTCAGCTCTCTGGACCATGTTTTCTTGGCC
CAGAACCCAGGGCACTCTCCTTGCTTTTGTACCCCATGGTGACTCTTGAC
CATCTTTTTTTTTCCTCCTCCCCCCCCGCCTGGGAAACCTAAAACCTCAC
CTATATCTCACCCCCCCAGCTATTGAATGCTGGCATATTTATTTCCCAAT
CAGAATTAGCTGGGAACAAGTTCCCAGAAGCTATGAGCAAAACCTCTCAT
GGAAACAGTTTTTTTTGGGGGGGGGCTCAATTAGTATTAGTATACAAGCA
GCTACAGATTCAATTCCCCAATTTTAAGACCTAGGCTTACAGAATGATTG
TGAAAACAGGTACCATCCTCTTGGTGCATACCAGAAATATACTTTCATAT
CCCTATATAGAATGAAGTGTACACTCAATGGTTTTTTTGGAAAATCCCTC
TTGTTGCTATGGTGCTTTTGCCACTTCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_k09.b1 MSMg01no160_k09.b1 CHROMAT_FILE:
MSMg01no160_k09.b1 PHD_FILE: MSMg01no160_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:40 2005
         (324 letters)



>mm_chr17_53198672_53199395
          Length = 724

 Score =  542 bits (280), Expect = e-158
 Identities = 301/308 (97%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattctgacagaatccatcaactctgtcattgatgaaatggccattacaatcatcactt 76
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 217 gaattctgacagaatccatcaactctgtcattgatgaaatggtcattacaatcatcactt 276

                                                                       
Query: 77  catgaaaggtatcacttgtatgttttttaactctaagaggataatacagacctcctgaag 136
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 277 catgaaaggtatcacttgtatgttttttaactctaaaaggataatacagacctcctgaag 336

                                                                       
Query: 137 gaatatgaactcagaggttcataagaccgtgcttatcaattttggctgcagaagtttttt 196
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 337 gaatatgaactcagaggttcataagactgtgcttatcaattttggctgcagaagttttct 396

                                                                       
Query: 197 gtatgggaacaggcttcctctaagtaaactcagaaagacacttgtcttcacctgtccctg 256
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 397 gtatgggaacaggcttcctctaagtaaactcagaaagacgcctgtcttcacctgtccctg 456

                                                                       
Query: 257 tcccagaagtccaagaggcaactcattctgaaggtcataggatcaagcaatcataacagc 316
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 457 tcccagaagtccaagaggcaactcattctgaaggtcacaggatcaagcaatcataacagc 516

                   
Query: 317 taagaatt 324
           ||||||||
Sbjct: 517 taagaatt 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)