BAC Information

Click to search

BAC

Clone NameMSMg01-161H01
Chromosome17 (Build37)
Map Location 20,330,602 - 20,331,331
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6
Downstream geneEG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161H01.T7 (MSMg01no161_h01.b1)MSMg01-161H01.TJ (MSMg01no161_h01.g1)
ACCAG360844AG360845
length1,2111,248
length of high quality
(start - end)
667 (195 - 861)111 (284 - 394)
definitionCHROMAT_FILE: MSMg01no161_h01.b1 PHD_FILE: MSMg01no161_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:02 2005CHROMAT_FILE: MSMg01no161_h01.g1 PHD_FILE: MSMg01no161_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGTGCTTGGGCGCTAAGACTACTAAGGGAGAGGATCCGCGGAATTCT
ATTATCTTACTGATACCATAAGGGATTACAATTTGAAATTGGAGATTCCT
TTCCATCTTTAAAGAAATCCCTCTCTCTCTCTCTCTCTCTCTATATATAT
ATATATATATATATATATATATATATAATCTCAAGCATACCACAACATTC
AATCTATACAAACTATATTTGTGATTACACACAGATGTCTTCTTCCCTTA
TGACTACTGTTCTTCAAATATTTCTTATTTAAAACAAAAGATATTGTTTG
CTGTTCTTAATCTTTCTGTTTAATAATCTCATAGAAGTATATTCTCATCT
GTCACAATATGAATCAAGATCATAATTAGAATGCACAAATAGAGAATGTT
ACTCGGAAATCAACTTTCTTTTTTAAAATAGTGACTGGAACTATTGTTTT
TTTTTTCCCCCCCCTTGATTTACAGTCCTGCTATAAAAAAAAGGGGATCA
TCATGAATTATTTTCTTTCCTCTCACATGTATTTATTATTTTTCCTGTGT
ACTTTTGTACATAACTTGTAAATTAATATTCACCATATACTGGCAGATGC
CTGCAGAGTCCAGAGAGCATCAGATATCCATAAAATCATGTGTAGGATGT
GGGTGCTAAGGCAAAACCAAAATTCTCTTCAAGAGCAATAAGCTCTTAAA
TACTGAACCTTACAGCATATGCATGTTTATGTACCCTTATCCCATTCTTC
TGTGTCAAATCATTCCTGTCTTTCTCTCTCTTTGTTTTATAGATAGGGTC
TCACTGTGTGAACTTGGCTGTCCTGGACCTCTCCATATCCACCAGCCTCA
CCTTGAACTCTCAGAGAATCACCTGGCTCTTACTCCCAAATGCTTGGATT
AAAGGTCTTCTACCATGCTCAGAAAATTTTTCTTCTTAACTTATGTTTGG
CGCATAATAACTTGACCAAAATTATAAACCCCCACTTTGAATTAAGAAAA
AAAAGTTTAATTTTAATTTTTAAAAATAAAAGGGCTGGGAAAAATTTTAT
GGAAATAACCTAATTTATTTTTCAAAAGGTTTTTTTTAGGAAAAATTCTA
AAACTTTAAGAAAAAAAAAATGAAAAAAAGGATTGTTTCTAACAAGGGGA
AAAAATATTTCTAAAAAAAAAAAAGGTTACCCCTTTCCTGGCTGGCGATG
AAAAAATATAA
NNAAAAAGACGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAATTTTCATGGGGGGGGAAATGAATCTGTA
AATATTTTTTTGGAAAAAGGGACATTTTTACTATGTCAATCCGGCTGATC
CATGAGCAGGGAATATGTCAGCATCTTCTAAAATCTTTTAAAATTTCTTT
GTGAAAACTTAAAGTTCTTGGGCTACAGTTCTTTCACTTGCTTTGTTAGA
GCCACACCATGATAGTTTATTTTATGGGGATACGGGCCCTAAATCTCAAA
ACAGCCATGATTCAAAACACAAATATGGAGGTTAAAATGAAGGAAGACCA
AAGTGGGGATGCTTCAATCCCACATAGAAAAGGAAACAAAGTAATATCTT
TAGGAAGACAAAGGGAGGGACCAGTATGGTAGAGAGGAGGGAGAGATTTT
TTTTTTCCCCCCCCCCCCAATCATTGGAATTGCCAGAAAAAAAGAACGGA
GATTTAGGTAAGTTAATAGAAAGATGTAGCAATGGGAGCTGACCTTAAAG
AGGAGACACAAAAATCCCTTTAAAAAATACAGAAAAAAACAACCAAACAC
ATGGAATTGAACAAAACCATCCAAGGTCTAAAAATTGAAGTAGAAACAAT
GAAGAAACCCCAAAGGGAGAAAACTCTGGAGATAGAAACCCTAGGGAAAA
AAATCAGGAACCATAGATGTGAGCATAAGCAACAGAATACAAGAGATGGA
AGAGAGAATATTAGGTACAGAAGATTCCTTAGAGAACATTTACCCAACAA
GAAAAGAAAATGCAAAATGTAAAAATATCCTAACCCAAAATATCCAGGAA
ATCCAGAACAAAATGAGGAGAGCAAACCTACGGAAAAAAGGGGTAGATGA
AAATGAAGATTTTCAACTTAAAGGCCCAGAAAAAATCCTTCACAAATTAT
AAAAAAAAACTTCTCATACCTAAAGAAAGAAATGGCCTTAAACATTCCAA
AAAGCCTAAAAAACTCCCAATAGACGGGATTCTAAAAAAAAAATCCCCTC
CGGACCCCTATTTATTTTAAAAACACCGGGCCTTTTAATCCGGACAAAAA
TTTTAAAGCCGCTTACGGGAAAAAAGGCTCGGTAAATCAATAATAGGGCG
AAATTTTTTAAAAATTTCCCCGAAATTTTTTTCCCTTGAAAAATTGATAA
ACCCAAGAAACCCTGGCCGCAGGTGTTTAATTACACCCTCTAAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_h01.b1 MSMg01no161_h01.b1 CHROMAT_FILE:
MSMg01no161_h01.b1 PHD_FILE: MSMg01no161_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:02 2005
         (667 letters)



>mm_chr17_20330350_20331417
          Length = 1068

 Score =  963 bits (498), Expect = 0.0
 Identities = 642/742 (86%), Gaps = 87/742 (11%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattcaatctatacaaactatatttgtgattacacacagatgtcttcttcccttatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 acattcaatctatacaaactatatttgtgattacacacagatgtcttcttcccttatgac 923

                                                                       
Query: 61  tactgttcttcaaatatttcttatttaaaacaaaagatattgtttgctgttcttaatctt 120
            |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 922 cactgctcttcaaatatttcttatttaaaacaaaagatattgtttgctgtttttaatctt 863

                                                                       
Query: 121 tctgtttaataatctcatagaagtatattctcatctgtcacaatatgaatcaagatcata 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tctatttaataatctcatagaagtatattctcatctgtcacaatatgaatcaagatcata 803

                                                                       
Query: 181 attagaatgcaca----------------------------------------------- 193
           |||||||||||||                                               
Sbjct: 802 attagaatgcacaatctcatagaagtatattctcatctgtcacagtatgaatcaagatca 743

                                                                       
Query: 194 --------------aa-tagagaatgttactcggaaatcaactttcttttttaaaatagt 238
                         || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 742 taattagaatgcacaattagagaatggtactcggaaatcaactttcttttttaaaatagt 683

                                                                       
Query: 239 gactggaactattg--ttt--ttt--ttttccccccccttgatttacagtcctgctataa 292
           ||||||||||||||  |||  | |  || |      ||||| ||||||||||||||||  
Sbjct: 682 gactggaactattgaatttcatatcattgt------ccttgctttacagtcctgctat-- 631

                                                                       
Query: 293 aaaaaag------gggatcatcatgaattattttctttcctctcacatgtatttattatt 346
               |||      | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ----aagtctcacgtgatcatcatgaattattttctttcctctcacatgtatttattatt 575

                                                                       
Query: 347 tttcctgtgtacttttgtacataacttgtaaattaatattcaccatatactggcagatgc 406
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 574 tttcctgtgtacttttgtacataacttgtaaattaatattcaccatataccggcagatgc 515

                                                                       
Query: 407 ctgcagagtccagagagcatcagatatccataaaa-tcatgtgtaggatgtgggtgctaa 465
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 514 ctgcagagtccagagagcatcagatatccataaaagtcatgtgtaggatgtgggtgctaa 455

                                                                       
Query: 466 ggcaaaaccaaaattctcttcaagagcaataagctcttaaatactgaaccttacagcata 525
           ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 454 ggcaaaaccaaaattctctccaagagcaataaactcttaaatactgaaccttacagcata 395

                                                                       
Query: 526 tgcatgtttatgtacccttatcccattcttctgtgtcaaatcattcctgtctttctctct 585
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 394 tgcatgtttatgtacccttatcccattcttctgtgtccaatcattcctgtctttctctct 335

                                                                       
Query: 586 ctttgttttatagatagggtctcactgtgtgaacttggctgtcctggacctctccatatc 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctttgttttatagatagggtctcactgtgtgaacttggctgtcctggacctctccatatc 275

                                 
Query: 646 caccagcctcaccttgaactct 667
           ||||||||||||||||||||||
Sbjct: 274 caccagcctcaccttgaactct 253


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1068
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1058
Effective search space:   695106
Effective search space used:   695106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)