BAC Information

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BAC

Clone NameMSMg01-162F15
Chromosome17 (Build37)12 (Build37)
Map Location 3,941,911 - 3,942,224107,742,599 - 107,742,834
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3
Downstream gene4930470H14Rik, Ppia-ps17_26.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162F15.T7 (MSMg01no162_f15.b1)MSMg01-162F15.TJ (MSMg01no162_f15.g1)
ACCAG361506AG361507
length726721
length of high quality
(start - end)		317 (44 - 360)237 (123 - 359)
definitionCHROMAT_FILE: MSMg01no162_f15.b1 PHD_FILE: MSMg01no162_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:42 2005CHROMAT_FILE: MSMg01no162_f15.g1 PHD_FILE: MSMg01no162_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:42 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,941,911 - 3,942,224)(107,742,599 - 107,742,834)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCTCTTGACATTTGATGAGCCTAAATGTTGGTGGCCTGAGAAATAG
ATTATTGAAGGGACCTCATCTCCATGTCTCCTATTCTAATACACAGATCT
GTAGTAGGATTCTAGACTATGAGCCATTCAAAGGTAGAGTTTGTTCCTAA
CTTTGACAATATCAGAGGTGAATTCTGAGTAAGGGGGGAAAGGTGACTAA
GAATGAGGAAGGTGTCTTTGATATGACAGCAAAGAAGGTTCTGAATAAAT
GGGAATCAAAACCCCTAGAATGTTTCAGAGGCAAGGCATAGCCCTCCCCT
GGGCACAACAATTATTTTTTGGAACCCCCCCCCCCTGGATAAGCAAGGAA
CAAGTTACTCTCTTTGAAGTTTGCCACTCCAAAATAGAATGTCTGGTTGA
AAATTACATCACTAGTCTTGACTTTGGATGTTTCATGAGTGTGGTAGAAA
TGTGTGTGGAAAGAAACACTCATGGAGGAAAGGGGTCTGTTTCAATTCAC
CAATCTACCAAGGTGTCAAACAGTAGAGGCAAGTCAATGCCTCTAAAGAA
AATTAAGGAGTTTGTCCTAGTTTGTAGTCTGTGATATGATAAAAACCATG
GCCAAAGACAACTTGTACAGAAAAGGGTTAATTTCATCTTACCGCTTTTT
TCATATCACTAATAACGACAAGGCGA

TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAGAGTATTTCAAGTCTGCCGGAGAGCA
AAGGAGCCAAACGGTTGTGCCCGAGGCAGCTATGGGATCCTCTCTCTTGA
TGAAGTGTCATTAAGAGATGCCATTGACGGCATTGGCAGCGTCATTATGA
AGTCTGTTGGTGGTGGTAATAAGGCTGGCACATTTGGAATGCAGAATGAC
ACTTCTCAAGACAGTGGCAGAGCATAGGCTGGTACTGCCGTGCCAGGATG
TGGCTCAGATCAAGGAATTTTTTTGTGCCTGAGAAAGCAGGGTCTGAAGG
GCCAAATGTCCACTGNNGTCCCCGACCGNTACCACTTCCTTGCCTCTAAG
ACTCAGTTTCCCATTCCTGCCTGAGAAAAAAAAAACAGCAATGTATCAGA
CCTCTGGGATCTACAACCTGGAGGGTCAGAATTCTGCTAGGCAGATAGAT
ACTAGAAGCAGGAAACTGGTTGTAATGGAAGGTGCCAGGTTAGAGGTGGC
AATGGAGATGCCCGTGAATGATGGGCTGTGCAGAAGGGATGCCGGAAAGG
CTTTGCCACATTTTGGTGAAAGATGGAAGTCATGAGCCAAGACGGCTAGT
GTGTATGTTGGCGCCACATTTTTACCCCATCCTCACCACCTTTTTTTTTC
CGTGGCCCCCCCCGTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_f15.b1 MSMg01no162_f15.b1 CHROMAT_FILE:
MSMg01no162_f15.b1 PHD_FILE: MSMg01no162_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:42 2005
         (317 letters)



>mm_chr17_3941708_3942424
          Length = 717

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcctcttgacatttgatgagcctaaatgttggtggcctgagaaatagattatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggaattctcctcttgacatttgatgagcctaaatgttggtggcctgagaaatagattatt 458

                                                                       
Query: 64  gaagggacctcatctccatgtctcctattctaatacacagatctgtagtaggattctaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaagggacctcatctccatgtctcctattctaatacacagatctgtagtaggattctaga 398

                                                                       
Query: 124 ctatgagccattcaaaggtagagtttgttcctaactttgacaatatcagaggtgaattct 183
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctatgagccattcaaaggtagaatttgttcctaactttgacaatatcagaggtgaattct 338

                                                                       
Query: 184 gagtaaggggggaaaggtgactaagaatgaggaaggtgtctttgatatgacagcaaagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 337 gagtaaggggggaaaggtgactaagaatgaggaaggtgtctttgagatgacagcaaagaa 278

                                                                       
Query: 244 ggttctgaataaatgggaatcaaaacccctagaatgtttcagaggcaaggcatagccctc 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 277 ggttctgaataaatgggaatcaaaacccctagaaggtttcagaggcaaggcatagccctc 218

                         
Query: 304 ccctgggcacaaca 317
           ||||||||||||||
Sbjct: 217 ccctgggcacaaca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no162_f15.g1 MSMg01no162_f15.g1 CHROMAT_FILE:
MSMg01no162_f15.g1 PHD_FILE: MSMg01no162_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:42 2005
         (237 letters)



>mm_chr12_107742399_107743035
          Length = 637

 Score =  410 bits (212), Expect = e-119
 Identities = 230/240 (95%), Gaps = 8/240 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggcagctatgggatcctctctcttgatgaagtgtcattaagagatgccattgacggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggcagctatgggatcctctctcttgatgaagtgtcattaagagatgccattgacggca 260

                                                                       
Query: 61  ttggcagcgtcattatgaagtctgttggtggtggtaataaggctggcacatttggaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggcagcgtcattatgaagtctgttggtggtggtaataaggctggcacatttggaatgc 320

                                                                       
Query: 121 agaatgacacttctcaagacagtggcagagcataggctggtactgccgtgccaggatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatgacacttctcaagacagtggcagagcataggctggtactgccgtgccaggatgtg 380

                                                                       
Query: 181 gctcagatcaaggaa----tttttttgtgcctgagaaagcagggtctgaagggccaaatg 236
           ||||||||| |||||    | |    ||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcagatcgaggaagggctgt----gtgcctgagaaagcagggtctgaagggccaaatg 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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