BAC Information

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BAC

Clone NameMSMg01-162P05
Chromosome17 (Build37)
Map Location 51,941,594 - 51,941,920
singlet/doubletsinglet
Overlap geneSatb1
Upstream geneTbc1d5, LOC100043451, LOC100043452
Downstream geneEG628919, LOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162P05.T7 (MSMg01no162_p05.b1)MSMg01-162P05.TJ (MSMg01no162_p05.g1)
ACCAG361914AG361915
length735720
length of high quality
(start - end)
318 (44 - 361)329 (386 - 714)
definitionCHROMAT_FILE: MSMg01no162_p05.b1 PHD_FILE: MSMg01no162_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:26 2005CHROMAT_FILE: MSMg01no162_p05.g1 PHD_FILE: MSMg01no162_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACTTTCTTGAGTTCTTTATATACATATTGGATATTAGTCCCT
TATCTGATTTAGGATAGCTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT
TTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTAT
GAGGTCCCATTTGTTGATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTTCCCCTGTGCCCTATTTTTTTTTTAAGATGTGATCT
CTTGCTGAACTTGTTTTTACATCACTCCCCCCCCCACTGGTTAACCAATG
AGCTTCAACCTCATCTCTACTGCAATGACAGTCATACATCACTGTGTTCA
GATTTACCTGGTCACTGAGAATACAAACTCAAGCCCTCATGACTGGCAGA
CACTTTGCTAACCCAGTCATCTCCCCAATACCTGATAACAATTTTGTATT
CTGGTAACCCAGAGACTTTCTATAGCTTCTTTGTGTATGTCCTCACAGTA
GGGCCTTCTCTTTGGCGTGGTGCGTACTTTTTAGTGCCCAGAAAACTTAA
TCCTGTCTCTGGAAAACAATTGACCAGGGTAGCTAGTGCCAGGTGCGGGG
GGGTATACTTGGACGGCGATGAAACACCGCCCAGC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAGTAACAACACCATGGTTCATTCTAGGT
CAGCCTTCCAATTTTCAAATGCTAATAACCAGGCAACATGCTCTCTGGAG
TTGTCTTCACCACATGGTCCCAGAAGTAAGTTGCTCTGCTTCACTGTGCC
ATCAGACTGACTTAGCTATTGTAGATTCATTCAAATTACTTTTATTTTCT
GGTTATAGATTCACATCCTCTCTATTTCAACAATGAGGAAAAGATAGCTG
CTGATGGGATAAATGAATTTATTTAAAAAAAAAGTTTTGTCTCAAGAAAA
TGAACATTCATTATTACAGAGTGCCTCGCCGCAGTCTGTGGCTTTAGCTT
GATCCAGAATTGCTCCTGTCTTAGAATTGCTAACTGAGATCAAAGCAGAA
CTGCAGGCCTCCAATGCAGCAAGGCTGAACACATGGACTACTGGGCAATA
TAGCAGCGTAAAGTCCAAAGGCTTCCTCTTAAGGTACCCAGGAATGCTCA
GGAGCCTTGCACAAAAACATACATGGAATGAATACTTGCTCTTCAGCATC
ATAAAGACAAGCTAGGAAAACCTAGTCACTCCAGAAATGCTTATGCAGAG
TAATGCAAGTTCAAAGGACTGGCGGACTAATATTCAAAATTACATTTTAA
ACTTGAATTCAAAGAAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_p05.g1 MSMg01no162_p05.g1 CHROMAT_FILE:
MSMg01no162_p05.g1 PHD_FILE: MSMg01no162_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:26 2005
         (329 letters)



>mm_chr17_51941394_51942120
          Length = 727

 Score =  594 bits (307), Expect = e-174
 Identities = 323/329 (98%), Gaps = 2/329 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtggctttagcttgatccagaattgctcctgtcttagaattgctaactgagatcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtggctttagcttgatccagaattgctcctgtcttagaattgctaactgagatcaaag 260

                                                                       
Query: 61  cagaactgcaggcctccaatgcagcaaggctgaacacatggactactgggcaatatagca 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||  | ||||
Sbjct: 261 cagaactgcaggcctccaatgcagcaaggctgaacacatgaactactgggca--acagca 318

                                                                       
Query: 121 gcgtaaagtccaaaggcttcctcttaaggtacccaggaatgctcaggagccttgcacaaa 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtgtaaagtccaaaggcttcctcttaaggtacccaggaatgctcaggagccttgcacaaa 378

                                                                       
Query: 181 aacatacatggaatgaatacttgctcttcagcatcataaagacaagctaggaaaacctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 379 aacatacatggaatgaatacttgctcttcagcatcataaagacaagctaggaaaaactag 438

                                                                       
Query: 241 tcactccagaaatgcttatgcagagtaatgcaagttcaaaggactggcggactaatattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcactccagaaatgcttatgcagagtaatgcaagttcaaaggactggcggactaatattc 498

                                        
Query: 301 aaaattacattttaaacttgaattcaaag 329
           |||||||||||||||||||||||||||||
Sbjct: 499 aaaattacattttaaacttgaattcaaag 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 727
Length adjustment: 9
Effective length of query: 320
Effective length of database: 718
Effective search space:   229760
Effective search space used:   229760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)