BAC Information

Click to search

BAC

Clone NameMSMg01-163A08
Chromosome17 (Build37)
Map Location 29,826,343 - 29,826,628
singlet/doubletsinglet
Overlap gene1300018I05Rik
Upstream geneSlc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8
Downstream geneMdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163A08.T7 (MSMg01no163_a08.b1)MSMg01-163A08.TJ (MSMg01no163_a08.g1)
ACCAG361960AG361961
length596720
length of high quality
(start - end)
44 (87 - 130)283 (74 - 356)
definitionCHROMAT_FILE: MSMg01no163_a08.b1 PHD_FILE: MSMg01no163_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:31 2005CHROMAT_FILE: MSMg01no163_a08.g1 PHD_FILE: MSMg01no163_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATATTTGGGCGCTAATACATCCTATAGGGAGAGGCATCCAGNCGGGGAA
TTCTCAAACGAGCGAATCTCACATGGCTTGAAAAGAGACACCTGAAATAA
ATGTCCAACATCCTTAGCCACCGGGGAAGTGGAAAATTAAACTGTGTTGT
GAGATTTCCTCTTTTCCTGTCATAATGGCTGAACACCCATTTATCCAATT
GAATTACTTCTTTTGAAAGAAATGGAGAAGGGCATTTGTCCCGTCCCCTT
TCCGTGTCTGGTCCCCTATGGATGCCCGGCTATGGGGCCCCAAAAAAAAG
GAGAACGAATTTCCCTATTTTCACCAGGGGGTTATTCTTCAGGAAAACCC
CCCTTTTTTTTTTTCTCCCCCCCCCCCCCCCCTTTGTGGGTATAATTTCG
CCGTTTTCCAAATTTTGCCCAAACATTTGTCAAATATATTCCACAAGCCC
CCCCCACCGATGAAAATAAAATAGCCTCCATTTTCCTATCCACTATCTCC
TCTTTTCCCCCTTTACAATTATCGCTTAATTTCTCTCTTTTCTTATAAAA
AAAACGTTTTCATTTCCTCTTTCAAAAACCAACAACTCCCTTTCCT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACATGGGAATCCAGGGACAAGTGAGG
CAGAAAAGAGACGAGGCCCTGGCTTTATCACTGGTCAACCAACAGATAGA
AAGGTAAATGTCCTGCTGTCCTCTGAAGGTCCTGAAGAGCAAAAACTTAT
AATTTTGGGTCTTATAGCATTGTGGTATCTAAGTTCAAGAAATTCAGGGC
TAAAGAATAGACCCAGGCGGGTCCAGGCACAGCCAAACCCACCCTGTATC
TAAGAATGTCCGGCCATAATATATAAAAAAGAGAATGCAGGAACTAGCCA
GGGCTATCATTTTTTTACCACATGGCCATACGGCAGGATGGCACCTTCCG
GGCGGCGCCTCCCTATAGCCCCCCATACATTGACCAGGTGTCCTGCTGAC
CTCGAGAAGTCCCAAGACCTTGTGCCTCCCTACACCTTAGCCGGCACGTA
TTACCCTGCTAATTTGTAATCCCCCCGCCAACATTTAAATAACCCAATCA
TGTGTAACCGCGCAAATTCTTTCGGCTCCCTCCTTTTTGGATTGTGGCTT
TTGCCTTTATAAGCCTGTAAAAAGTCCGGGCCGGTGTCTAACTCCCCTGC
CCTCTGCGCGGTGCATGACTTTCAACCCCATCATGCTGGCTTGAACGCTC
CTTTGCTGTTCGTGTGATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_a08.g1 MSMg01no163_a08.g1 CHROMAT_FILE:
MSMg01no163_a08.g1 PHD_FILE: MSMg01no163_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:31 2005
         (283 letters)



>mm_chr17_29826317_29827002
          Length = 686

 Score =  514 bits (266), Expect = e-150
 Identities = 280/286 (97%), Gaps = 3/286 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatgggaatccagggacaagtgaggcagaaaagagacgaggccctggctttatcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cacatgggaatccagggacaagtgaggcagaaaagagacgaggccctggctttatcactg 253

                                                                       
Query: 61  gtcaaccaacagatagaaaggta---aatgtcctgctgtcctctgaaggtcctgaagagc 117
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 252 gtcaaccaacagatagaaaggtaaataatgtcctgctgtcctctgaaggtcctgaagagc 193

                                                                       
Query: 118 aaaaacttataattttgggtcttatagcattgtggtatctaagttcaagaaattcagggc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaaaacttataattttgggtcttatagcattgtggtatctaagttcaagaaattcagggc 133

                                                                       
Query: 178 taaagaatagacccaggcgggtccaggcacagccaaacccaccctgtatctaagaatgtc 237
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 132 taaagaatagacccaggcgggtccaggcacagccaaacccaccctgtagctaagaatgtc 73

                                                         
Query: 238 cggccataatatataaaaaagagaatgcaggaactagccagggcta 283
           ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 72  cggccataaaagataaaaaagagaatgcaggaactagccagggcta 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 686
Length adjustment: 9
Effective length of query: 274
Effective length of database: 677
Effective search space:   185498
Effective search space used:   185498
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)