BAC Information

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BAC

Clone NameMSMg01-164C05
Chromosome17 (Build37)
Map Location 52,975,355 - 52,975,692
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164C05.T7 (MSMg01no164_c05.b1)MSMg01-164C05.TJ (MSMg01no164_c05.g1)
ACCAG362712AG362713
length754755
length of high quality
(start - end)
234 (126 - 359)291 (69 - 359)
definitionCHROMAT_FILE: MSMg01no164_c05.b1 PHD_FILE: MSMg01no164_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:54 2005CHROMAT_FILE: MSMg01no164_c05.g1 PHD_FILE: MSMg01no164_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTTGTGATCGATTGGGTTACCTCACTCAGGATGATGCCCTCCA
GGTCCATCCATTTGCCTATTACCCCCATAAATTCATTCTTTTTAATAGCT
GAGCAGTACTCCATTATGTAAATGTACCACGTTTTTTGTATCCATTCCTC
TGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGG
CTGCTATGAACATAGTGGAGCATGTGTCCTTCTTATCGGTTGGGACATCT
TCTGGATATATTCCCAGGAGAGGTATTGTGGGATCCTCAGGTAGTACTAT
GTCCAGTTTTCTGATTAACCACCCGACTGATTTCCAGAGTGGTTGTACAA
GCTGCAATCCCACCAACAATGGAGGAGAGTTCCTCTTTCTCCACATCCTT
GCCTACATCTGTTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGT
GTGAGATGGAATCTCAGGCTTGTTTTTGATTTGCATTTCTCTGATGATTA
AGGATGTCGAACATTATCTTTCCAAGTAGCTTCTCATGTCTTCGGTATCC
CTCGATTTGATAATTCTTCGTTTACTTCTAAACCCCATCCTTTTAATGGA
GTTTAATTAGTTCTTACTGAATTCCCCCTTCTTGTCTACTTACACTATAT
AATGTTTTTTATTTCCTCTATCTTAATTATTATCCATCATAATAATCTCT
TTAG
GAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTATGCTCTATTTTTTCTGGATACTGAAATAG
GATAATTTCAAATATGTACATGTAATATAGGATAATAAATATATACAAGA
ACTATTCAGTGAATGTTTTTATACTGTTAACATCATCATTGCCTAAATTA
ACAGGTGAGATTCTCTTACATAAATCTTACATAAATGCTTTGTGAATAAT
GTAAGTCACAAAGGAAAACAAGATGGCAAAAGAACTTTCTATTAGAGATA
CTGCCCCTATTTTTGACAAGCCTGATCATTTAAATAACAGTACAAGTCTG
CTGTCCTTATTTAATGTACCCCCCCCCCCAATGTTCCATTTGAACAGAAT
AGCTTGTTCAAGACATCCTGTTCTTTTTCTAACAAAACATGTGATGAGAA
CAACTTATAAGGAGAAATGTCCTTATACATGTAAACTAAAAATAAGCCTG
CTCCTACCAAATTTAAAGTATGTCCAGTGAAATATATCTCCATAAAAGAA
ACTTCATAATGGTATACAGTCCCTCTGTAGGCTTTGGCCTTGACCTGCTA
CTAACTGCTCTTGTTAAATGCTTTCAGTTTATTCATATAGCACCCAATAA
ATATCTACTCTGATAGGTTCTGACAGAGACTAAATTAGGAAGGACTGATA
ACGTGGAAAGGCAAGGATTTGGATTGTTTACCTTCTGAACCAAATGCCAA
AATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_c05.g1 MSMg01no164_c05.g1 CHROMAT_FILE:
MSMg01no164_c05.g1 PHD_FILE: MSMg01no164_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:54 2005
         (291 letters)



>mm_chr17_52975202_52975892
          Length = 691

 Score =  422 bits (218), Expect = e-122
 Identities = 286/338 (84%), Gaps = 47/338 (13%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgctctatttttt-ctggatactgaaataggataatttcaaatatgtacatgtaata 59
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ttattctctatttttttctggatactgaaataggataatttcaaatatgtacatgtaata 213

                                                                       
Query: 60  taggataataaatatatacaagaactattcagtgaatgtttttatactgttaacatcatc 119
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 214 taggataataaatatatacaagaactattcagtgtatgtttttatactgttaacatcatc 273

                                                                       
Query: 120 attgcctaaattaacaggtgagattctcttacat------------aa------------ 155
           |||||||||||||||||||||||||||||||| |            ||            
Sbjct: 274 attgcctaaattaacaggtgagattctcttacttggtgaccacttcaacaatcccctcct 333

                                                                       
Query: 156 ----------------------atcttacataaatgctttgtgaataatgtaagtcacaa 193
                                 ||||||||||| ||||||||||||||||||||||||||
Sbjct: 334 ccttctgctcagtgtcttggggatcttacataagtgctttgtgaataatgtaagtcacaa 393

                                                                       
Query: 194 aggaaaacaagatggcaaaagaactttctattagagatactgcccctatttttgacaagc 253
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 394 aggaaaacaagatggcaaaagaactttctactagagatactgcccctatttttgacaagc 453

                                                 
Query: 254 ctgatcatttaaataacagtacaagtctgctgtcctta 291
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctgatcatttaaataacagtacaagtctgctgtcctta 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)