BAC Information

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BAC

Clone NameMSMg01-164H15
Chromosome17 (Build37)
Map Location 59,530,770 - 59,531,086
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164H15.T7 (MSMg01no164_h15.b1)MSMg01-164H15.TJ (MSMg01no164_h15.g1)
ACCAG362941AG362942
length739741
length of high quality
(start - end)
318 (46 - 363)303 (76 - 378)
definitionCHROMAT_FILE: MSMg01no164_h15.b1 PHD_FILE: MSMg01no164_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:20 2005CHROMAT_FILE: MSMg01no164_h15.g1 PHD_FILE: MSMg01no164_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGATGAAGGTTAAGTGATTCACAAATCTACATGCATAAAGATA
AGAACTTTCAGGACAGTGTATTGCTCTGTCTATGGGGAAGAATAATAGTG
GCAGAGTCTCTGCTAGAGCCAAAGACCTAGCCAACCATAAGTTTTTGACC
AGGTAACACTAAAGGACATGGGCTTAGTCCTGTGGTGTGGACCTTAGGGC
AACCAGTATGTGCCTGATTCAATAGAATTAATAGGTATATCTTGACAGAA
GTCACACAGTTCACAGTTGAATAAGTTTACCAGTTTTTGTCCCCTTGGTC
ATGAATAGAATCTTTTTTTTTCTACGCCCCCTACCTAGTAAGGATGAAGC
TTTCATGCCAGTATAAGATCGACCTTTCCATGTCCTATTACTCAAGTATT
TCACATCTTCAGCACGAGTGTCTTAATATCAAATTCTGGAGAGTAACCAA
GAGAGAGCTATAACCATATCATCTCACTAATCAACAACTCATAAAGGGAT
AACCGAACCCTGGCAGTGAGATTTTTATTTGACACTCTATTATGCCTGGG
GAAACAGCTCCTTTTAAACATCCTTCATACTCAGACACAGACTCAGACAC
ACACTCATCACACACATATCCCCACACTCTTACCCACTCTCTGATTTACA
CTCATAGTAACCCACACTTCCTTAAGAAGCTTCCACAGG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGACACCCAGGGATACACAGAGA
ATCACTGGTCTCGAAAACAAACAAACAAAAAAAAAAAACAAAAAACAAAA
AACAAAAACAAAAAACAAACAAAGATTAAGAACACAGGGTTAAAGAGATT
AACATAGGTGAAGAGAGTTATTTTGTAACTTAAGAATAAAAAAATAACAT
AATTTAATAGAATTTTAATGATTTTTGTGTATATGGATATATATCTTTAC
CTATAAATATAATGTATATGATATATGTAAGCTTTTACTTATATATAATA
CTTAAATAAGATAAATTATTTTGTAAAAGACCACCCCCACATAAGAAATG
TTTAAGTATTTGGACATGTATTGCTATGGTTTTACTACGTATTAAATTTT
TTGAGATTTTATTCAAAATAAGTGCAGCATGGCCATCGTTGATCACAATC
GTCAACTTAAAATGTGACTTACAAAAGATCTAAAGCTATTGAAGCAACCA
AGAAGATGCTCTCTATTTTTTTCTCAAACTGTAGTACAAAAGACATAAAT
CATATTCAGAATCAGTAGTCAGGTAGATGAAATCCAGCAATGCTTGGGCA
GTGTGAAGGCAAGAAACCGTGCTAAGAAGGAAGTAAATGCTGAGAAAGGA
GCATGGGGAACATTGAAATAGGAAGCCATTCTGTCTGTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_h15.b1 MSMg01no164_h15.b1 CHROMAT_FILE:
MSMg01no164_h15.b1 PHD_FILE: MSMg01no164_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:20 2005
         (318 letters)



>mm_chr17_59530566_59531287
          Length = 722

 Score =  532 bits (275), Expect = e-155
 Identities = 305/317 (96%), Gaps = 4/317 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagatgaaggttaagtgattcacaaatctacatgcataaagataagaactttc 64
           ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattctcagatgaaggttgagtgattcacaaatctacatgcataaatataagaactttc 264

                                                                       
Query: 65  aggacagtgtattgctctgtctatggggaagaataatagtggcagagtctctgctagagc 124
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 aggacagtgtattgctatgtctatggggcagaataatagtggcagagtctctgctagagc 324

                                                                       
Query: 125 caaagacctagccaaccataagtttttgaccaggtaacactaaaggacatgggcttagtc 184
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 325 caaagacctagccaaccataagtttttgcccaggtaagactaaaggacatgggcttagtc 384

                                                                       
Query: 185 ctgtggtgtggaccttagggcaaccagtatgtgcctgattcaatagaattaataggtata 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtggtgtgcaccttagggcaaccagtatgtgcctgattcaatagaattaataggtata 444

                                                                       
Query: 245 tcttgacagaagtcacacagttcacagttgaataagt----ttaccagtttttgtcccct 300
           |||||||||||| ||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 445 tcttgacagaagacacacagttcacagttgaataagtctgcttaccagtttttgtcccct 504

                            
Query: 301 tggtcatgaatagaatc 317
           |||||||||||||||||
Sbjct: 505 tggtcatgaatagaatc 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 722
Length adjustment: 9
Effective length of query: 309
Effective length of database: 713
Effective search space:   220317
Effective search space used:   220317
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)