BAC Information

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BAC

Clone NameMSMg01-165E24
Chromosome17 (Build37)
Map Location 32,166,385 - 32,167,027
singlet/doubletsinglet
Overlap geneHsf2bp
Upstream geneAbcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk
Downstream geneRrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165E24.T7 (MSMg01no165_e24.b1)MSMg01-165E24.TJ (MSMg01no165_e24.g1)
ACCAG363509AG363510
length7591,366
length of high quality
(start - end)		655 (35 - 689)---
definitionCHROMAT_FILE: MSMg01no165_e24.b1 PHD_FILE: MSMg01no165_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:25 2005CHROMAT_FILE: MSMg01no165_e24.g1 PHD_FILE: MSMg01no165_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTGTCCAGAATCCGCGGAATTCCAGGAC
AGCGTTCCTACCAAGTGAGATCCTGTCACAAAAAAAAGAAAGAGAATTCA
CAAGCAAAAGCTAGATAAACGGTGCTGTAGAAGGCCATCTCTTCAACCTT
GCCTTGGCCAGAAAAGTGGGGGTCGTCAGGGTAAGCCCAAGTTGAAAGTT
TACCGTGACCTCACAGGAAGAAATGAGGTATGCCTAATGCCTAATATAGA
GCTCATGTCTGGGTAGTCAGAGCTACTCTGGGCAAGGCTTACCTGTCAGA
AAAGCTTTGCCATCACAGTAAGGTCTAGTTACGTCTTGGCCTAGCACCAG
TTTGCTACAGGATTTTATCCTACGAATAAGGAGCAGCTATTGAAGTGGCT
TAATTCCAGTACCACAATGATAGAATCAGACAAAAGTGACCAGGCTGGGG
GCTAGTGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAAAGAT
CCTGAGTTCAAATCCCAGCATTCACATGGTGGCTCACAACCATCTGTAAT
AAGATCTGATGCCCTCTTCTGGGGTGTCTGAAAACAGCTACAGTGTACTT
ACATAATATATAAATAAATAAAAAAATAAATAAATAACCCTTTAAGATAG
CCAGGTAATACCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTC
AAGGTCAGCCTGCTCTACAGAGGGACAGCCAGGTCTACACAGAGAAATAC
CTTGTAGGG

NTTAGTATGAGCTGGGGCGCTGGCGTGAXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXATAGACTTTTACTTATATACTTAAAGGGTTTGGTTTTAAA
ATTTGTTTTTTGCCTGNTNNNNNNNCCCCNCCCCCCTTCCCTTCCCCTTC
TCCCTTCTTCTCTTCCTCTTATTCTTATCATTTTTATTACTATTATCATC
GGTGGGAGAAGAAAATCTTCTTTTATTTCATTTTTCTCTTTCTATCTCCT
TTCTCTATATCTTTCCTACTATCTCTCTCTCTTACATACTTTTTACATTT
TCCTAAACCTCATTCCTTTTATTTTTTATCCTACTCTTCTTTCTCTAAAC
ATTATTTTACCTTTTTACTACTTTCAATACTTTATCTTTTATTTTCCCTT
TCTTTTTTTTTTTTTTTCACCTCTCTTCTCTCTAACTTTCTTTTTTTGTG
GGTCCAAAAAAAAAACTTTTTTTTTTTTTTTCCCCTAACGATATCTCTCC
TAATCTCTCCCCATTAAAAAAAAAAAATTCCCTATTTTTATCCTCTTTTT
CACTTTTCTCCTACTCATTCCTTCTCTTCTTACTTCCTATATCCTTTCTT
TCTCATTTCTCCCTTTTCTTTTCTATCCCTTCTCCTCTTCCATTCTCTCT
TCATCCACCTCTTCCTTATCTTTCCCTCTTCCTTTTTTCCTTTCCTCTCC
CTTTTAACTATTTCTCCTCTTCTTTCACTTCATCAACCCTCTCTTTCCCT
CTTATTTATATTTCCTTTATCTTTCCATCATTTTCCTCTATTTTTTTTCT
TTCCCATCTTTTCTTCTCTCTCTCCTTCCCTCTTTCTTTTTCCTCCTTAT
CTCTATTTTCCTTACTACTTCTTACTCTTTTTTCTCTCTTCTTCTTCTCT
CCCTCACCACTTCTCTTCACATTCACTTTTCATTCAATCTAATTCATCTA
ATTCCTCCACAATCTTCCTCTCCTATTATCTACTTACCATCCTTTTTAAC
TCATTTCTTCCTTTTCTTTTTCATTATCTCACACATCTTCTTTTTTCTAT
TTTCCTCACCTCCCCATCTCCCCTCTCATTTTATTCTATTATTCTATTCT
TCACTAACTATATTAATCTCCCATCTCTTCCATTTCTTCTCCTTCTTTTC
TTTCTCCACTCTCTTCTTCTTCTCCTCCTCCCTATACTCATTCTCTACTT
TTATCCCATTTATCCTCTTTATCTCTTCATTACTCCCCTCTTCTACTTCT
CTACCCCTCTCTCTTTCCTTCCTCTTTCCTCTTCTCTCTCCTTCTTATCT
ATCTTACTCTCTCCACTCTTTCACTACTCNCCTATCCCTTCCTCTCTNTC
ACACTCTCTTCCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_e24.b1 MSMg01no165_e24.b1 CHROMAT_FILE:
MSMg01no165_e24.b1 PHD_FILE: MSMg01no165_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:25 2005
         (655 letters)



>mm_chr17_32166181_32167235
          Length = 1055

 Score = 1154 bits (597), Expect = 0.0
 Identities = 633/647 (97%), Gaps = 4/647 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacagcgttcctaccaagtgagatcctgtcacaaaaaaaagaaagagaatt 64
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacagcggggctaccaagtgagatcctgtcacaaaaaaaagaaagagaatt 264

                                                                       
Query: 65  cacaagcaaaagctagataaacggtgctgtagaaggccatctcttcaaccttgccttggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacaagcaaaagctagataaacggtgctgtagaaggccatctcttcaaccttgccttggc 324

                                                                       
Query: 125 cagaaaagtgggggtcgtcagggtaagcccaagttgaaagtttaccgtgacctcacagga 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 cagaaaagtgggggtcgtcagggtaagcctaagttgaaagtttaccgtgacctcacagga 384

                                                                       
Query: 185 agaaatgaggtatgcctaatgcctaatatagagctcatgtctgggtagtcagagctactc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaatgaggtatgcctaatgcctaatatagagctcatgtctgggtagtcagagctactc 444

                                                                       
Query: 245 tgggcaaggcttacctgtcagaaaagctttgccatcacagtaaggtctagttacgtcttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggcaaggcttacctgtcagaaaagctttgccatcacagtaaggtctagttacgtcttg 504

                                                                       
Query: 305 gcctagcaccagtttgctacaggattttatcctacgaataaggagcagctattgaagtgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcctagcaccagtttgctacaggattttatcctacgaataaggagcagctattgaagtgg 564

                                                                       
Query: 365 cttaattccagtaccacaatgatagaatcagacaaaagtgaccaggctgggggctagtga 424
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttaattccagtagtagaatgatagaatcagacaaaagtgaccaggctgggggctagtga 624

                                                                       
Query: 425 gatggctcagtggttaagagcactgactgctcttccaaagatcctgagttcaaatcccag 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 gatggctcagtggttaagagcactgactgctcttccaaagatcctgagttcaaatctcag 684

                                                                       
Query: 485 cattcacatggtggctcacaaccatctgtaataagatctgatgccctcttctggggtgtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cattcacatggtggctcacaaccatctgtaataagatctgatgccctcttctggggtgtc 744

                                                                       
Query: 545 tgaaaacagctacagtgtacttacataatatataaataaataaaaaaataaataaataac 604
           |||||||||||||||||||||||||||||| |||||||||||||    ||||||||||||
Sbjct: 745 tgaaaacagctacagtgtacttacataataaataaataaataaa----taaataaataac 800

                                                          
Query: 605 cctttaagatagccaggtaataccagcacttgggaggcagaggcagg 651
           ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctttaagaaagccaggtaataccagcacttgggaggcagaggcagg 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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