BAC Information

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BAC

Clone NameMSMg01-165N09
Chromosome17 (Build37)
Map Location 88,837,715 - 88,838,286
singlet/doubletsinglet
Overlap genenone
Upstream geneCalm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165N09.T7 (MSMg01no165_n09.b1)MSMg01-165N09.TJ (MSMg01no165_n09.g1)
ACCAG363853AG363854
length702792
length of high quality
(start - end)
575 (46 - 620)179 (75 - 253)
definitionCHROMAT_FILE: MSMg01no165_n09.b1 PHD_FILE: MSMg01no165_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:09 2005CHROMAT_FILE: MSMg01no165_n09.g1 PHD_FILE: MSMg01no165_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGAATAGCATTTAGCTACTTGAGTTTAAAATAGATGCAATGATG
AATGGGAGAAAGAACTACATAAAATATAAGTTCATTCTGTATTTCAAATA
CTGTACTAGCAATATTAGTCCATCTTTGTCAGAAGGTGAAAGGCTAGCAG
ATAACCTTGGCTGAGACACTGACGTTGTGGCTGCTTTTTGTCGTTATTGT
TTGTTTGTTTGTTTGTTTTGAGACAGGGTTTCTCTGTGCAGCCCTGACTG
TCCTGGGACTCTCTCTGTAGATCAGGCTGGGTTTGAACTCACAGAGATCT
GCCTGCCTCTGCCTCCCACGTGCTGGAATTCAAGGCGAGCACCACCCCTG
GCTGAACTTGGCCCCCCAACAGCCAACTTTTCTTGCTCTTCCTTTCCTTC
TCGTGCTCTCTCTTCTGTATCTTCTTTAATTTGTCTACATGAGTGGGGGG
CAACAGTGATGCTATGTAAGGAGATTTGCAGTAGATGTTGCTCCTCCGCT
GAAGCACATCTTACATTTGCCCTGAGATTTCGTACTCTGAAGAAAACTGG
GATTCTCCGGGACTTTGAATAGAAAACAAACAAACAAAACAAAATGAAAT
AGAACTGGTAGGCGAGCTTACTTGGATCATACGAATAATGTTGTTTGTGG
AN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTATGGTAAGGACAACCTTCAAA
TACTTGCCAATGGTCTGGCAGAGTTCCTGTGTGCCTAGATCTCACTGGTC
CCAGTTACTCCCCCTTATTTTTCATCCAGAATGAGTGAGATCTTTCTGCA
CTGGTGCTTAAGTACGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGCCCATACTACTTAATCATCTACTCCACCTACATTTCTTCAATCCCT
TTCATAAACCACACTTTTTTTTTTTTTCAATTTTATCTTCCCAGCCTACT
TTATATTTTTATTTTCCCCCCCCACTCTCTTAAGGGGATTTGCTTTTGAT
TCATATGAGAAATTTTTTTTGTATGTCCCCCCCCCCCCACTATTTTTTTA
TTTTTTTTTTATTTATTACATATATCTTTAACAATTATATTCTTCTCCTA
TTGCATTTCTCTTTATCCTTCCTTTTCAATCGTTAGATGTATAAATTTAA
AATATAATATAACCTTTAACTTCTCATACATTATCATCTCCTCTTATTCA
TTTCCTTCACTACCTTATCTTTTATGTTTTTTATATTTTATTAACTATTA
TAACTTATATCTTAGATTTTCTTACTTTCCTCGCACTCCTCTTTTAATCC
TCTTATTACTTCTTCCTAGCACTTTCCCTTATCTCCCAATTTCCTTACTC
CTTCTACCCCCCACCCTATCTTCCCCTATCCTTTCTTCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_n09.b1 MSMg01no165_n09.b1 CHROMAT_FILE:
MSMg01no165_n09.b1 PHD_FILE: MSMg01no165_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:09 2005
         (575 letters)



>mm_chr17_88837513_88838487
          Length = 975

 Score = 1036 bits (536), Expect = 0.0
 Identities = 563/572 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   cggaattcaggaatagcatttagctacttgagtttaaaatagatgcaatgatgaatggga 62
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggagttcaggaagagcatttagctacttgagtttaaaatagatgcaatgatgaatggga 262

                                                                       
Query: 63  gaaagaactacataaaatataagttcattctgtatttcaaatactgtactagcaatatta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaaagaactacataaaatataagttcattctgtatttcaaatactgtactagcaatatta 322

                                                                       
Query: 123 gtccatctttgtcagaaggtgaaaggctagcagataaccttggctgagacactgacgttg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtccatctttgtcagaaggtgaaaggctagcagataaccttggctgagacactgacgttg 382

                                                                       
Query: 183 tggctgctttttgtcgttattgtttgtttgtttgtttgttttgagacagggtttctctgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tggctgctttttgtcgttattgtttgtttgtttgtttgttttgagacagggtttctctgt 442

                                                                       
Query: 243 gcagccctgactgtcctgggactctctctgtagatcaggctgggtttgaactcacagaga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcagccctgactgtcctgggactctctctgtagatcaggctgggtttgaactcacagaga 502

                                                                       
Query: 303 tctgcctgcctctgcctcccacgtgctggaattcaaggcgagcaccacccctggctgaac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tctgcctgcctctgcctcccacgtgctggaattcaaggcgagcaccacccctggctgaac 562

                                                                       
Query: 363 ttggccccccaacagccaacttttcttgctcttcctttccttctcgtgctctctcttctg 422
           ||||   |  || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 563 ttggtttcttaaaagccaacttttcttgctcttcctttccttctcgtgctctttcttctg 622

                                                                       
Query: 423 tatcttctttaatttgtctacatgagtggggggcaacagtgatgctatgtaaggagattt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatcttctttaatttgtctacatgagtggggggcaacagtgatgctatgtaaggagattt 682

                                                                       
Query: 483 gcagtagatgttgctcctccgctgaagcacatcttacatttgccctgagatttcgtactc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gcagtagatgttgctcctccgctgaagcacatcttacatttgccctgagatttcgtactc 742

                                           
Query: 543 tgaagaaaactgggattctccgggactttgaa 574
           ||||||||||||||||||||||||||||||||
Sbjct: 743 tgaagaaaactgggattctccgggactttgaa 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)