BAC Information

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BAC

Clone NameMSMg01-165N24
Chromosome17 (Build37)
Map Location 91,747,536 - 91,862,086
singlet/doubletdoublet
Overlap genenone
Upstream geneNrxn1, EG668871, LOC668872, LOC627235
Downstream geneLOC100043741, LOC100043742, EG640442, LOC627395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165N24.T7 (MSMg01no165_n24.b1)MSMg01-165N24.TJ (MSMg01no165_n24.g1)
ACCAG363881AG363882
length730732
length of high quality
(start - end)
694 (34 - 727)662 (66 - 727)
definitionCHROMAT_FILE: MSMg01no165_n24.b1 PHD_FILE: MSMg01no165_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:12 2005CHROMAT_FILE: MSMg01no165_n24.g1 PHD_FILE: MSMg01no165_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,747,536 - 91,748,215)(91,861,511 - 91,862,086)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCACATG
TAAACACCAATCAAACCTTCAACATTTGAACTCTGATGTTCAGGAAAAAT
GTGAAGACAGATTTACTTCTCAGGAACTGTACTCAGAGTTTGCTTCATTG
AACACTTGGTTTAACATAGATATAGGATTCTAATTGGACTTCTGTCCTGG
AGGTATTCTGCTATGTTAGAATAATGCACGGGTACAAACAAAGACTTCTC
AGCATGAATAATGATTTCTTCTCCTATGTCAAACTATGAGCCTTTGTTAC
TGAGTTACACTCAAGAACGCAAATGATGTCAGATAAATAATATTTATCAC
TATTTAAAAATAGCTATACAAAAACTATATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATCTCAATACCCTGCCTT
TCTCCAAGTGTCACTGACAGGCACATCCTACTTCGTGGGGAATCAAACCA
AGCTAAACTAAGATGTGTTCTTCAATCAGGATTCTTCATGTCATAAGATT
GTATCTACTTAAATAAATTGTGGATTTTAGCTAACTTTAATGTTTATGTA
CAACTTCTTTTCATTAATAAATGATAATAAATAAGTTATTTTTAAATACC
ATACATTGCTGTTTTCTATTTGTGTAGTGATATAAGCTTTATCATTAAGA
ATATTAAAAATTGTCACACTTACGTTTCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATAAATATTTCATTCAGTTACCCTTAAAACATTGT
GATGTGTTGTATATTTGGTTTTTTTAATAATTATTCTATTATGTATTCTT
CTCAATTTTATAGAAAAAATTGTCTTAAAACTTCAAAAAATGAACAAAAA
CATAGGCTCTTTGAGTTCTTCCCTACCAAACTCTGTTTTTGGGTTTCACT
TTTGGTAGCCTAAAGTAAACAAATATGTACTATATAGTTTGGGTTTGACA
ATCTTCATAAAGTTGTGTACAAAAATATGTAATGTATTTGTTTACAAGTT
CCACCTTCAGTCAGTTGCAAGGAAATTTGCAATTTTGAATTTGATGTTTT
TAGAATATTAGATATTTTCTGTTAATCCAACCAAACAACTTAATCAAAAT
TCAGAATTTACACATAAAAATCACTTCATACATACATACATACATACATA
CATACATACATACATACATACATACATACATACATACATGCACACACATA
CATACACACATAAACATATAATCACACATGCACATATACTTACTCAAGAC
TAAAAGCTCTAGAAACACTCACTGTTTAATTCAGTGTAGAGATTTAAATC
AACTGATCTCAGGCTTTGAAGTCTGAGCTTTCTACTATTATTATCATCAA
AATCACAAGAATATTCAGATTGACACTTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_n24.b1 MSMg01no165_n24.b1 CHROMAT_FILE:
MSMg01no165_n24.b1 PHD_FILE: MSMg01no165_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:12 2005
         (694 letters)



>mm_chr17_91747330_91748423
          Length = 1094

 Score = 1280 bits (662), Expect = 0.0
 Identities = 678/688 (98%), Gaps = 8/688 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcacatgtaaacaccaatcaaaccttcaacatttgaactctgatgttcaggaaaaa 66
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcacatgtaaacacaaatcaaaccttcaacatttgaactctgatgttcaggaaaaa 266

                                                                       
Query: 67  tgtgaagacagatttacttctcaggaactgtactcagagtttgcttcattgaacacttgg 126
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgtaaagacagatttacttctcaggaactgtactcagagtttgcttcattgaacacttgg 326

                                                                       
Query: 127 tttaacatagatataggattctaattggacttctgtcctggaggtattctgctatgttag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tttaacatagatataggattctaattggacttctgtcctggaggtattctgctatgttag 386

                                                                       
Query: 187 aataatgcacgggtacaaacaaagacttctcagcatgaataatgatttcttctcctatgt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aataatgcacgggtacaaacaaagacttctcagcatgaataatgatttcttctcctatgt 446

                                                                       
Query: 247 caaactatgagcctttgttactgagttacactcaagaacgcaaatgatgtcagataaata 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caaactatgagcctttgttactgagttacactcaagaacgcaaatgatgtcagataaata 506

                                                                       
Query: 307 atatttatcactatttaaaaatagctatacaaaaactatatatatatatatatatatata 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atatttatcactatttaaaaatagctatacaaaaactatatatatatatatatatatata 566

                                                                       
Query: 367 tatatatatatatatatatatatatatatatatatctcaataccctgcctttctccaagt 426
           |||||||||||||||||||||||||||||        |||||||||||||||||||||||
Sbjct: 567 tatatatatatatatatatatatatatat--------caataccctgcctttctccaagt 618

                                                                       
Query: 427 gtcactgacaggcacatcctacttcgtggggaatcaaaccaagctaaactaagatgtgtt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtcactgacaggcacatcctacttcgtggggaatcaaaccaagctaaactaagatgtgtt 678

                                                                       
Query: 487 cttcaatcaggattcttcatgtcataagattgtatctacttaaataaattgtggatttta 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cttcaatcaggattcttcatgtcataagattgtatctacttaaataaattgtggatttta 738

                                                                       
Query: 547 gctaactttaatgtttatgtacaacttcttttcattaataaatgataataaataagttat 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gctaactttaatgtttatgtacaacttcttttcattaataaatgataataaataagttat 798

                                                                       
Query: 607 ttttaaataccatacattgctgttttctatttgtgtagtgatataagctttatcattaag 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttttaaataccatacattgctgttttctatttgtgtagtgatataagctttatcattaag 858

                                       
Query: 667 aatattaaaaattgtcacacttacgttt 694
           ||||||||||||||||||||||||||||
Sbjct: 859 aatattaaaaattgtcacacttacgttt 886



 Score =  103 bits (53), Expect = 6e-26
 Identities = 53/53 (100%)
 Strand = Plus / Minus

                                                                
Query: 348 atatatatatatatatatatatatatatatatatatatatatatatatatata 400
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 atatatatatatatatatatatatatatatatatatatatatatatatatata 543



 Score =  103 bits (53), Expect = 6e-26
 Identities = 53/53 (100%)
 Strand = Plus / Minus

                                                                
Query: 346 atatatatatatatatatatatatatatatatatatatatatatatatatata 398
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 atatatatatatatatatatatatatatatatatatatatatatatatatata 543



 Score =  103 bits (53), Expect = 6e-26
 Identities = 53/53 (100%)
 Strand = Plus / Minus

                                                                
Query: 344 atatatatatatatatatatatatatatatatatatatatatatatatatata 396
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 atatatatatatatatatatatatatatatatatatatatatatatatatata 543



 Score =  101 bits (52), Expect = 2e-25
 Identities = 52/52 (100%)
 Strand = Plus / Minus

                                                               
Query: 343 tatatatatatatatatatatatatatatatatatatatatatatatatata 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tatatatatatatatatatatatatatatatatatatatatatatatatata 543



 Score =  101 bits (52), Expect = 2e-25
 Identities = 52/52 (100%)
 Strand = Plus / Minus

                                                               
Query: 350 atatatatatatatatatatatatatatatatatatatatatatatatatat 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 atatatatatatatatatatatatatatatatatatatatatatatatatat 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 138
Number of extensions: 57
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 14
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no165_n24.g1 MSMg01no165_n24.g1 CHROMAT_FILE:
MSMg01no165_n24.g1 PHD_FILE: MSMg01no165_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:12 2005
         (662 letters)



>mm_chr17_91861478_91862537
          Length = 1060

 Score =  810 bits (419), Expect = 0.0
 Identities = 555/643 (86%), Gaps = 72/643 (11%)
 Strand = Plus / Minus

                                                                       
Query: 25  taaaacattgtgatgtgttgtatatttggtttttttaataattattctattatgtattct 84
           ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct: 609 taaaacattgtgatgtgttgtatatttgg-ttttttaataattgttctattatgtatttt 551

                                                                       
Query: 85  tctcaattttatagaaaaaa-ttgtcttaaaacttcaaaaaatgaacaaaaacataggct 143
           ||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 550 tctcaattttata-aaaaaatttgtcttaaaacttcaagaaatgaacaaaaacataggct 492

                                                                       
Query: 144 ctttgagttcttccctaccaaactctgtttttgggtttcacttttggtagcctaaagtaa 203
           |||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct: 491 ctttgaattcttccctactaaactctgtttttgggtttcacttatagtagcctaaagtaa 432

                                                                       
Query: 204 acaaatatgtactatatagtttgggtttgacaatcttcataaagttgtgtacaaaaatat 263
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 431 acaaatatgtactatatagtttgtgtttgacaatcttcataaagttgtgtacaaaaatat 372

                                                                       
Query: 264 gtaatgtatttgtttacaagttccaccttcagtcagtt----gcaaggaaatttgcaatt 319
           ||||  ||||||||||||||||| ||||||||||||||    ||||||||||||||||||
Sbjct: 371 gtaacatatttgtttacaagttctaccttcagtcagttagttgcaaggaaatttgcaatt 312

                                                                       
Query: 320 ttgaatttgatgtttttagaatattagatattttctgttaatccaaccaaacaacttaat 379
           ||     |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 311 tt-----tgatgtttttagaatattagatattttctgttaatccaaccaaacatcttaat 257

                                                                       
Query: 380 caaaattcagaatttacacataaaaatcacttcatacatacatacatacatacatacata 439
           | |||||||||||||||||||||||| |||||||||  ||                    
Sbjct: 256 ccaaattcagaatttacacataaaaaccacttcata--ta-------------------- 219

                                                                       
Query: 440 catacatacatacatacatacatacatacatacatgcacacacatacatacacacataaa 499
                                     ||||||||||||||||||||            ||
Sbjct: 218 --------------------------tacatacatgcacacacata------------aa 197

                                                                       
Query: 500 catataatcacacatgcacatatacttactcaagactaaaagctctagaaacactcactg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 catataatcacacatgcacatatacttactcaagactaaaagctctagaaacactcactg 137

                                                                       
Query: 560 tttaattcagtgtagagatttaaatcaactgatctcaggctttgaagtctgagctttcta 619
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 136 tttaattcagtgtagagatttaaatcaactgatctcaggctttgaagtctgaacattcta 77

                                                      
Query: 620 ctattattatcatcaaaatcacaagaatattcagattgacact 662
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  ctattattatcatcaaaatcacaagaatattcagattgacact 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1060
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1050
Effective search space:   684600
Effective search space used:   684600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)