BAC Information

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BAC

Clone NameMSMg01-166L02
Chromosome17 (Build37)
Map Location 36,993,671 - 36,994,286
singlet/doubletsinglet
Overlap geneTrim26
Upstream geneMdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6
Downstream geneTrim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166L02.T7 (MSMg01no166_l02.b1)MSMg01-166L02.TJ (MSMg01no166_l02.g1)
ACCAG364437AG364438
length761724
length of high quality
(start - end)
360 (48 - 407)616 (75 - 690)
definitionCHROMAT_FILE: MSMg01no166_l02.b1 PHD_FILE: MSMg01no166_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:16 2005CHROMAT_FILE: MSMg01no166_l02.g1 PHD_FILE: MSMg01no166_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGC
GGAATTCCCAGCATTTGTACCGTAGAAGCTAGAGGACAAAGAGTTCAGGA
CAGACTTGCCCTGTTTAAAACAAAACAAAACAAACAAACAAACTAACAAA
CAAAAAACAATGGCCACATCATCTCTTTTAAAAACAAGTTTACTTTACCA
ACATTTTCACTTTATGTCACCCTCCTTCTTTATTGAGACATGTCTTGCAG
GCTGTCCAGTGAGTTGCAGCAATCCTCCTGCTTTAGACTCCAGAATGCTG
GGAGTCATGTATGTAGACCATGCCTGGGTGTGTCAGTATTTTTAAAATCT
TGATGTTGGTTCCCTTATTCAACCCAACCTACTGCAGCACAAGCTCTTTA
CAGGGTGTTGAGGAAGTAGCCCCCCCCGACGTGTTCCTTCTGCCTTTCAG
ATCCCTTCTATTGGTTCAACCCCGCCGTGCTGACTCTCATCGTACTTGTG
CCTACGATCTTCCTGCAAGTCTCTGTACGCCTTGTATACCTCTTTCTGCA
GCACACATTTGATATGCACGGCCCAACCCCTGTTCCCTTCCACCATTGTC
TCCTTGCTTCCTTATTTCCACTTTAATCCCCTATCACCCCCCTTATTTTC
CACCCCCTTACCACCTTCCTTTCCCGCCCTTTTTTTCCTTGCCCTTCTCC
CCGTTTCCACCCTCTTCTTCCTCCCTCCTTTATTTTTCTCTACCACACTA
TATTTCTAACC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAGATAAACTTCTTTCTCTGCAGCG
AGGCCTGAGGCAGTTCCAGGGTAAGCATTGGGAAAAGCACCAGATCGGGG
GTCAGGCTCGGCCACACTGGGAGGTTTCCTGGCTTCTCCCCACCATATTC
TCCCATCTCAGCCTTCCAAGGAGCTCTGGCTTCTGTATCTTTTATCCTTG
GGATCTCCAGTAGAGCCCTGTTCCAAGTAAGAAATGAGTTCTCTGGGTCT
ACAAGTCATTTCTATCGTTTTCATTTTTCCTCCATAGGCAAGCTGCTGAG
AGACTTGGAGTATAAGACAGGTACGTGAACAGAAGGTTGTTCCCATTTTA
CCCTGTGGAATCCTCACTGGAATTGCCCATAGGTGGCCCCACCCCCTTAC
ATCATTTCAGATCAGTCTCCCATGTAGTCTGCAGTATTGCTGAGCCTTTG
ATGTCACAGGTCACACACCATAAGGTGCTTCTTATGAGACCTTATGAGAG
CAAACAGCAGTGGCAGCCCGAGGCCAGAGATCATCTATGCTGTGTGTACC
AAGTACCTCAGGGACACAGTTCACAGAGACCATGATATAAAGAGTGCTCG
GGAATATATAGAACTGTGCAGTGAGGCAGATACTATGGAGACTAGTCACT
CCTTCCCAGCCCACCACTGATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_l02.g1 MSMg01no166_l02.g1 CHROMAT_FILE:
MSMg01no166_l02.g1 PHD_FILE: MSMg01no166_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:16 2005
         (616 letters)



>mm_chr17_36993471_36994486
          Length = 1016

 Score = 1129 bits (584), Expect = 0.0
 Identities = 608/616 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagataaacttctttctctgcagcgaggcctgaggcagttccagggtaagcattgggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagataaacttctttctctgcagcgaggcctgaggcagttccagggtaagcattgggaa 260

                                                                       
Query: 61  aagcaccagatcgggggtcaggctcggccacactgggaggtttcctggcttctccccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcaccagatcgggggtcaggctcggccacactgggaggtttcctggcttctccccacc 320

                                                                       
Query: 121 atattctcccatctcagccttccaaggagctctggcttctgtatcttttatccttgggat 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattctcccatctcagccttccaaggagctctggcttctgtatcttttatccttgggat 380

                                                                       
Query: 181 ctccagtagagccctgttccaagtaagaaatgagttctctgggtctacaagtcatttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccagtagagccctgttccaagtaagaaatgagttctctgggtctacaagtcatttcta 440

                                                                       
Query: 241 tcgttttcatttttcctccataggcaagctgctgagagacttggagtataagacaggtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgttttcatttttcctccataggcaagctgctgagagacttggagtataagacaggtac 500

                                                                       
Query: 301 gtgaacagaaggttgttcccattttaccctgtggaatcctcactggaattgcccataggt 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 501 gtgaacagaaggttgttcccattttaccctgtggaatcctcactggaactgcccataggc 560

                                                                       
Query: 361 ggccccacccccttacatcatttcagatcagtctcccatgtagtctgcagtattgctgag 420
           |||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct: 561 ggccccacccccttacattatttcagatcagtctcccgtgtagtctgcagtactgctgag 620

                                                                       
Query: 421 cctttgatgtcacaggtcacacaccataaggtgcttcttatgagaccttatgagagcaaa 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctttgaggtcacaggtcacacaccataaggtgcttcttatgagaccttatgagagcaaa 680

                                                                       
Query: 481 cagcagtggcagcccgaggccagagatcatctatgctgtgtgtaccaagtacctcaggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagcagtggcagcccgaggccagagatcatctatgctgtgtgtaccaagtacctcaggga 740

                                                                       
Query: 541 cacagttcacagagaccatgatataaagagtgctcgggaatatatagaactgtgcagtga 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 cacagttcacagagaccatgatataaagagtgctcgggaatatatagaactgcgcagtga 800

                           
Query: 601 ggcagatactatggag 616
           ||||||||||||||||
Sbjct: 801 ggcagatactatggag 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)