Query= MSMg01no167_h06.b1 MSMg01no167_h06.b1 CHROMAT_FILE:
MSMg01no167_h06.b1 PHD_FILE: MSMg01no167_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:13 2005
(500 letters)
>mm_chr17_12356240_12357139
Length = 900
Score = 909 bits (470), Expect = 0.0
Identities = 488/496 (98%), Gaps = 4/496 (0%)
Strand = Plus / Plus
Query: 5 gaattcccgacctcgctcagatcccaggaatgcgtgtcagccgcttaacttaaatgtgca 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcccgacctcactcagatcccaggaatgcgtgtcagccgcttaacttaaatgtgca 268
Query: 65 gtatcccactccgcatccccagacagtgcgtgcgtgcgtgcgtgcgtgcgtagtatgagg 124
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 269 gtatcccactccgcatccccagacagtgcgtgcgtgcgtgcgtgcgt----agtatgagg 324
Query: 125 agcgctgagcccaccaagcctgcccggtgttgaagctccctttggaggttgtgtgcagct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcgctgagcccaccaagcctgcccggtgttgaagctccctttggaggttgtgtgcagct 384
Query: 185 gtttaggggagaccagctgtgggccccccaggagaaggggttcttagtatggacttaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttaggggagaccagctgtgggccccccaggagaaggggttcttagtatggacttaaga 444
Query: 245 gagccctgttctaaaacctcaagactccatcactttacctggggcttggctttgttttgt 304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 gagccctgttctaaaacctcaagactccatcactttacctgaggcttggctttgttttgt 504
Query: 305 ttttatttttcattgtgagacaaggaactacatctcgacatgttgcaaaaacagaaaggg 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 ttttatttttcattgtgagacaaggaaatacatctcgacatgttgcaaaaacagaaaggg 564
Query: 365 aggtgaaggtggcctcgaggttatttcctacccagtcagacaggcacacactgtctgacg 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggtgaaggtggcctcaaggttatttcctacccagtcagacaggcacacactgtctgacg 624
Query: 425 gcacgaagccttcatgcttttcagggagccctgacaaccaggaatgtgtacagaggaatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcacgaagccttcatgcttttcagggagccctgacaaccaggaatgtgtacagaggaatt 684
Query: 485 gtgagggtgtcggggt 500
||||||||||||||||
Sbjct: 685 gtgagggtgtcggggt 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_h06.g1 MSMg01no167_h06.g1 CHROMAT_FILE:
MSMg01no167_h06.g1 PHD_FILE: MSMg01no167_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:13 2005
(360 letters)
>mm_chr17_12449791_12450550
Length = 760
Score = 584 bits (302), Expect = e-171
Identities = 334/360 (92%), Gaps = 24/360 (6%)
Strand = Plus / Minus
Query: 1 tctccagggtcatgctggttcgtgatactgaaccactgaaactgtattccctccttccct 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tctccagggtcatgctggtttgtgatactgaaccactgaaactgtattccctccttccct 601
Query: 61 ctcttcctctctttgtctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtct 120
||||||||||||||||| |||||||||||||||||||
Sbjct: 600 ctcttcctctctttgtc------------------------tctgtctgtctgtctgtct 565
Query: 121 gtctctgtctctctctgtatatgtgtacctgggtatgtatggggcaggagtggaccctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtctctgtctctctctgtatatgtgtacctgggtatgtatggggcaggagtggaccctgt 505
Query: 181 agctttaagttgtaacttaaaagtcaccaagagaattgaagagtagaagtgcactaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agctttaagttgtaacttaaaagtcaccaagagaattgaagagtagaagtgcactaggca 445
Query: 241 gcagcgctttgtatccccactcacctgccagagatggagctcaaagttctctctgtggaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcagcgctttggatccccactcacctgccagagatggagctcaaagttctctctgtggaa 385
Query: 301 gggcatgggtgctgcactagacctactccgtggtgtcctacccctgctatcaactgtggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggcatgggtgctgcactagacctactccgtggtgtcctacccctgctatcaactgtggt 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space: 263601
Effective search space used: 263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
