Query= MSMg01no167_m18.b1 MSMg01no167_m18.b1 CHROMAT_FILE:
MSMg01no167_m18.b1 PHD_FILE: MSMg01no167_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:39 2005
(662 letters)
>mm_chr17_63384968_63386029
Length = 1062
Score = 1241 bits (642), Expect = 0.0
Identities = 657/662 (99%)
Strand = Plus / Plus
Query: 1 tctccaaaagttggtgttaattctgggagcatcttgctgtggaggctcctgtattggttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccaaaagttggtgttaattctgggagcatcttgctgtggaggctcctgtattggttg 260
Query: 61 ttgatgacagacagcattcctacatgagggtacgccctgttccccagccactactttcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatgacagacagcattcctacatgagggtacgccctgttccccagccactactttcta 320
Query: 121 gcacacagcttaagaattgcccacagcttggacttagaaaggcaagctttgcttttggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacacagcttaagaattgcccacagcttggacttagaaaggcaagctttgcttttggac 380
Query: 181 ttgctggcacacctgtgcttatatggagcatggtgacctcgcagcctctttgacaatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctggcacacctgtgcttatatggagcatggtgacctcgcagcctctttgacaatttg 440
Query: 241 ctggttttacttgttgagtgcttgggttttatttaaaatacaaatcgatggattgcccca 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ctggttttacctgttgagtgcttgggttttatttaaaatacaaatcgatggattgtccca 500
Query: 301 aggactagattttaagtcaggaagctcatcatagactttgatctgtcatagaatgtcctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggactagattttaagtcaggaagctcatcatagactttgatctgtcatagaatgtcctt 560
Query: 361 gcatttgcttttattttcacaaaacaaaattgcttctctctgtgaccgctcacaccccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatttgcttttattttcacaaaacaaaattgcttctctctgtgaccgctcacaccccct 620
Query: 421 ttagtcccagaattctatgtaaatttctgataatacatcacagtcgaaaagatttacaac 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 ttagtcccagaattctatgtaaatttctgataatacatcacagtcaaaaagatttacaac 680
Query: 481 acttcatgataaggcataattgcattggttccaaaatgtatagttatgccacttaatttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttcatgataaggcataattgcattggttccaaaatgtatagttatgccacttaatttt 740
Query: 541 acaatgagatttaattaaccctcccttcttgatatcagaaacccccagtgatataattgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 acaatgagatttaattaaccctcccttcttgatatcagaaacccccagtgaaataattgt 800
Query: 601 ctttgcaagtcatgccgagcagtgacgccctgcttgcgcactccatctggtttgttcttg 660
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 801 ctttgcaagtcatgccgagcagtgacgccctgcttgggcactccatctggtttgttcttg 860
Query: 661 ta 662
||
Sbjct: 861 ta 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_m18.g1 MSMg01no167_m18.g1 CHROMAT_FILE:
MSMg01no167_m18.g1 PHD_FILE: MSMg01no167_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:39 2005
(569 letters)
>mm_chr17_63544029_63544998
Length = 970
Score = 1040 bits (538), Expect = 0.0
Identities = 562/570 (98%), Gaps = 1/570 (0%)
Strand = Plus / Minus
Query: 1 aattccagtgtattccagaacacactccctcagtctctcttcaccaagtggttattcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 aattccagtgtattccagaacacactccctcagtctctcttcaccaagtggttattcatt 711
Query: 61 gataagtgatggtgaacatatatggcctaaaatgtagagtagatctctactgtttaaaag 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 710 gataagtgatggtgaacatatatggcccaaaatgtagagtagatctctactgtttaaaag 651
Query: 121 tgacatgcaatgttctgtctagagtgagacgtagatgggtttctagccaaactctgtaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tgacatgcaatgttctgtctagagtgagacgtagatgggtttctagccaaactctgtaac 591
Query: 181 tgtgtcagagtgaagagccacgtctacccgtaccacgacagtccttagctccctaaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tgtgtcagagtgaagagccacgtctacccgtaccacgacagtccttagctccctaaggca 531
Query: 241 acagccctttttgagtctgcccaggctgaattgaaagggatgatcagtaaggtcaagcca 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 acagccccagttgagtctgcccaggctgaattgaaagggatgatcagtaaggtcaagcca 471
Query: 301 ttaaattctcttccttctcttctcattggcaaatgtcaggagaaaccaggctttccagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 470 ttaaattctcttccttctcttctcattggcaaatgtcaggagaaaccaggctttctagag 411
Query: 361 ctaaagaaaagcgctctgaaagttttatctgtagcacatggatgtgggtacagttctgga 420
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 410 ctaaagaaaagtgctctgaaagttttatccgtagcacatggatgtgggtacagttctgga 351
Query: 421 atccatacactgca-ttttctggagaaaaatgcaaaggaattgggaaataacttctgagc 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atccatacactgcatttttctggagaaaaatgcaaaggaattgggaaataacttctgagc 291
Query: 480 ctccttatagagcctggcagtggtggcccgttctcattaaagataaagcaagacagttcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctccttatagagcctggcagtggtggcccgttctcattaaagataaagcaagacagttcc 231
Query: 540 tatagaggaaacctggtttctccctcttag 569
||||||||||||||||||||||||||||||
Sbjct: 230 tatagaggaaacctggtttctccctcttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space: 536640
Effective search space used: 536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
