BAC Information

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BAC

Clone NameMSMg01-170H22
Chromosome17 (Build37)
Map Location 88,712,293 - 88,712,606
singlet/doubletsinglet
Overlap genenone
Upstream geneTtc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170H22.T7 (MSMg01no170_h22.b1)MSMg01-170H22.TJ (MSMg01no170_h22.g1)
ACCAG367040AG367041
length720715
length of high quality
(start - end)
320 (46 - 365)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no170_h22.b1 PHD_FILE: MSMg01no170_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:27 2005CHROMAT_FILE: MSMg01no170_h22.g1 PHD_FILE: MSMg01no170_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAAGCTTCCCCGTAGGGCTTGGAGAGAGGCTCAGGTCCAAGCAC
TCCCTTGGCAGCGACCCAAGTGCTTATAACTCCAGATCCAGTGGAATCCA
GTGCCCTCTCCTGGCTTCTGTGGGTACTGCACCCATGTGGTGCACAGACC
TGCATGCAGTCAAAATTCCAGGACTCATTAAATTAATAAAAACATTTAAC
TGCTTCTGTAAAGCAGTTGAAACAGTTGATGAAATGAAGAAACAGCTGAT
TTGGAAGAAAACCTTTACTGGTGATACGTTGGATAGAAGTAGATACAAAT
AACTCAAAAAACATTTTTTTTACCCCCCCCAACCACTCTAATCAATAAAT
GGACTAACAAACAGTTATCTAAAGTGGAAATAAATAAATAAGTAAATAAA
TAACCATCAATCATACGAGAAACCTGAAACTGTATGGGCTTTTCAAACCT
TAAAGCTCATACCCCAATGAAGAACTTCCTCCAACAAGGCCACACCTCTA
ATCCTTCCCAAACAGTTCCACTCACTGGGGACCAAGCTTTGAAATACATG
AACCTGAGGGGGACCACTCTCATCCACACAGCCACCCATGTGAAAGAGCA
TCGTGACCAAGCCTCAAGCAGTCCGGGAAAGTGGATACATAAAGTGAATG
AGAGCTCAATTTGTAACAGG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACATGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTTTTTATATCCCCACCACGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_h22.b1 MSMg01no170_h22.b1 CHROMAT_FILE:
MSMg01no170_h22.b1 PHD_FILE: MSMg01no170_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:27 2005
         (320 letters)



>mm_chr17_88712089_88712808
          Length = 720

 Score =  547 bits (283), Expect = e-160
 Identities = 307/315 (97%), Gaps = 1/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaaagcttccccgtagggcttggagagaggctcaggtccaagcactcccttgg 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcaaaagcttccccatagggcttggagagaggctcaggtccaagcactcccttgg 264

                                                                       
Query: 64  cagcgacccaagtgcttataactccagatccagtggaatccagtgccctctcctggcttc 123
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagcggcc-aagtgcttataactccagatccagtggaatccagtgccctctcctggcttc 323

                                                                       
Query: 124 tgtgggtactgcacccatgtggtgcacagacctgcatgcagtcaaaattccaggactcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtgggtactgcacccatgtggtgcacagacctgcatgcagtcaaaattccaggactcat 383

                                                                       
Query: 184 taaattaataaaaacatttaactgcttctgtaaagcagttgaaacagttgatgaaatgaa 243
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 taaatgaataaaaacatttaactgcttctgtagagcagttgaaacagttgatgaaatgaa 443

                                                                       
Query: 244 gaaacagctgatttggaagaaaacctttactggtgatacgttggatagaagtagatacaa 303
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 gaaacagctggtttggaagaaaacctttactggtgatacgttggatagaagtagatataa 503

                          
Query: 304 ataactcaaaaaaca 318
           ||| |||||||||||
Sbjct: 504 atacctcaaaaaaca 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)