BAC Information

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BAC

Clone NameMSMg01-170I21
Chromosome17 (Build37)
Map Location 45,061,780 - 45,062,054
singlet/doubletsinglet
Overlap geneSupt3h
Upstream geneDscr1l1, Enpp5, Enpp4, Clic5, Runx2, 4930564C03Rik
Downstream geneEG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170I21.T7 (MSMg01no170_i21.b1)MSMg01-170I21.TJ (MSMg01no170_i21.g1)
ACCAG367082AG367083
length726712
length of high quality
(start - end)
322 (47 - 368)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no170_i21.b1 PHD_FILE: MSMg01no170_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:32 2005CHROMAT_FILE: MSMg01no170_i21.g1 PHD_FILE: MSMg01no170_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCATTAAATGTTTTCAGGCTGTAATCAGCTACAGGTAACTGGA
ACCTTACAAAGGGAAAACATAGATAAGGGGAAATGATTATAGCACACTAA
CACAGACTAGCTAGAAAAGGAAGGGGTGGGGGTAGCATAGCCCAAAATCT
CTAGAATATAGCATATGACACACAGAGTAAGCAAAAGTCACCCAAGTACC
AAAACAGACAAACTAGTAAAGAATATAAACTAGAACTACATCTCCTTACA
CACACACACACACACACACACACACACACACTCACACACACACACACACA
CACACACAATTGGGCTGATTTTTTTTGCACCCTCCCCCAGTGGGGGGAAA
GACAGGNTTTTAATGAATGTTGACAATAAAACTGGAAAGCTATTCAGTAA
AAGACAAAATTGGTTCCACATATAAAAAATGGATTAAACAAACTAAGGAT
ATATAAGAAAAATTGAAATCATTTAAAAAATACTGGAAAGAAATTCAAGT
GAATTATTCTTTAAATTCACTATGCAAACTGGAACTCGTGATTCAAAATT
CAACATAAATAAAGATCATATGGTAAAGTAAAAGTATTTCAAGCCAAACA
AAATCTCCTGATAGCAAACTTTTCAAACTGATAAAATTAACACACTGTAA
GGGTATCTTTGCTCCATATACTACAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGAAGGCTTGTACAACCACTCTGGAAAT
CCGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGTTTTTATATCCCCCCCACGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACTATTTCCT
AAACACATGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_i21.b1 MSMg01no170_i21.b1 CHROMAT_FILE:
MSMg01no170_i21.b1 PHD_FILE: MSMg01no170_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:32 2005
         (322 letters)



>mm_chr17_45061520_45062241
          Length = 722

 Score =  532 bits (275), Expect = e-155
 Identities = 275/275 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccattaaatgttttcaggctgtaatcagctacaggtaactggaaccttacaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ggaattctccattaaatgttttcaggctgtaatcagctacaggtaactggaaccttacaa 476

                                                                       
Query: 64  agggaaaacatagataaggggaaatgattatagcacactaacacagactagctagaaaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agggaaaacatagataaggggaaatgattatagcacactaacacagactagctagaaaag 416

                                                                       
Query: 124 gaaggggtgggggtagcatagcccaaaatctctagaatatagcatatgacacacagagta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaaggggtgggggtagcatagcccaaaatctctagaatatagcatatgacacacagagta 356

                                                                       
Query: 184 agcaaaagtcacccaagtaccaaaacagacaaactagtaaagaatataaactagaactac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agcaaaagtcacccaagtaccaaaacagacaaactagtaaagaatataaactagaactac 296

                                              
Query: 244 atctccttacacacacacacacacacacacacaca 278
           |||||||||||||||||||||||||||||||||||
Sbjct: 295 atctccttacacacacacacacacacacacacaca 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)