BAC Information

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BAC

Clone NameMSMg01-171E17
Chromosome17 (Build37)
Map Location 20,951,673 - 20,951,953
singlet/doubletsinglet
Overlap geneV1re1
Upstream geneLOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3
Downstream geneV1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171E17.T7 (MSMg01no171_e17.b1)MSMg01-171E17.TJ (MSMg01no171_e17.g1)
ACCAG367584AG367585
length711729
length of high quality
(start - end)
315 (46 - 360)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no171_e17.b1 PHD_FILE: MSMg01no171_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:29 2005CHROMAT_FILE: MSMg01no171_e17.g1 PHD_FILE: MSMg01no171_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGATGGGCATTGAACTGAATCCACAGATTGCTTTTGGTGAGATTG
CTATTTTCACTGTTAATTCTACCTCTCCATGAGCATGGGGGATCCTTCCA
TTTTCTGATATCTTCTTCAATTTCTTTCTTCAAGGACTTGAAGTTCTCAT
GATACATAAATTTTACTTGCCTAGTTAGAGTTATAGAAATATTTTATGTT
ATTTGCAGCTGTAGTAATGGGTATTATCTTCCTAATTACTACCTAAACCC
ATTTATGATTGGTATAAAGAGGACTATTGATTTCTTTGAGTTAATATGTA
TCCAACCACTTTGTGGACCCGCCCCCCGCTATAGTCATTTCCTGGTAGAA
TTTCTGGAGTTGCTTATATATACTATCATATCATCTACAAATATCTATAT
TTAACTTTTTCTTTTCCAATTTATATCCCGTTAATCTCCTTTTGGTTTCT
TATTGCTTGGTGTAGAACTTCTAATAATATATTGGATAGACAGGGAAAGG
ATGAGCAGACTTTTCTTGTCCCTGATTTTAGTGGAATTGCTTAAAGTTTC
TCTCCATTAAGTTGATGTCGGCTATAGGCTTGCTGTATATTTCTTTGATT
ATGTTTAGGTATGTACCTTGTATCCCTTATTTATCTTATACTTTTAACTG
GAAGTGCATGG
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATATCTTTTTTTTGTGTTTTATT
TTTGCTATTTCTGTTGGTTGATCGCATATACAGGGAAAAGCATATTTACT
AGCATGAATAGGATCCAGCAGAGAGAAATGAACAGGCCCATGAACTTTGC
TGTTTGCTCTTTAAATTCCTTCCAGCAGGAGTTCCTGGTGCTTATGGTGA
TTGCCTGAAAGACACTCAAGAGACAGGTCATGCTAATTGACATACTCCTG
GAAACTCTTCTAACATACATAATTAGTTTACACCCAACATCATCGAATAA
GTCATTCCTTTTTTTATCTGCCCCCCCCCCTGGAAGTCCTTTGGAGAAAA
TAATCAAGGAGTTTGATGCGAATACATGAATAAGTATTATATCTATGATC
TTTAATGTGCGTTCTTTGTTATAAAGGACTAAATAGTAGAAAAGAAGAGA
GAAGTTTCCCAGAATACCAAGTGCACTCTGAAGTGAGAGTACAATTCCCA
TTGCCAGGTTCCCAAAATCCATTATGTCATTCAGCAAATTTTCCTTCAAA
TTATGGCAATAATCACAGCTCTGAGCCAAATCATGTATTGACGTTTTCTA
AGTTGGAATGAGTGGTTTTACAACAATCACTGGAGTTTCTATATCCCAGT
CCATTTGTGTCTTTTTATCCCCAACCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_e17.g1 MSMg01no171_e17.g1 CHROMAT_FILE:
MSMg01no171_e17.g1 PHD_FILE: MSMg01no171_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:29 2005
         (283 letters)



>mm_chr17_20951473_20952154
          Length = 682

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%), Gaps = 1/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatcttttttttgtgttttatttttgctatttctgttggttgatcgcatatacaggga 60
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 481 aatatcttttttttgtgttttatttttgctatttctgttggttgat-gtatatacaggga 423

                                                                       
Query: 61  aaagcatatttactagcatgaataggatccagcagagagaaatgaacaggcccatgaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaagcatatttactagcatgaataggatccagcagagagaaatgaacaggcccatgaact 363

                                                                       
Query: 121 ttgctgtttgctctttaaattccttccagcaggagttcctggtgcttatggtgattgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttgctgtttgctctttaaattccttccagcaggagttcctggtgcttatggtgattgcct 303

                                                                       
Query: 181 gaaagacactcaagagacaggtcatgctaattgacatactcctggaaactcttctaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gaaagacactcaagagacaggtcatgctaattgacatactcctggaaactcttctaacat 243

                                                     
Query: 241 acataattagtttacacccaacatcatcgaataagtcattcc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acataattagtttacacccaacatcatcgaataagtcattcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 682
Length adjustment: 9
Effective length of query: 274
Effective length of database: 673
Effective search space:   184402
Effective search space used:   184402
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)