BAC Information

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BAC

Clone NameMSMg01-172I10
Chromosome17 (Build37)
Map Location 26,331,502 - 26,331,803
singlet/doubletsinglet
Overlap geneAxin1
Upstream geneUnkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28
Downstream genePdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172I10.T7 (MSMg01no172_i10.b1)MSMg01-172I10.TJ (MSMg01no172_i10.g1)
ACCAG368409AG368410
length722749
length of high quality
(start - end)
273 (45 - 317)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no172_i10.b1 PHD_FILE: MSMg01no172_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:01 2005CHROMAT_FILE: MSMg01no172_i10.g1 PHD_FILE: MSMg01no172_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGTTTCAGAGTTGTAATGCTTGGATGATTTTTGTGCTTTACTGT
GCCAAATGATTTTTGTTGGTACCCGTGATTGTTTCACTGGATATAGTTTC
TAAGAGATATAATGTTTGGTTTTTTAATGTATAGAATCCCCTGCTTGAGA
ACTGTAAAACACACTCAAATTCATACTGCCTCTGTATTTGTTTCGTTTGT
CACCACCGAATCCTTACCCACCTAGCTTCGAGGACCCTCCTTTCAGAGAC
CCCCATACCTGACTGGGGTCGTCCGTGACAGCTGGCGCCTGAATGTGGGA
CTCGATTTAGGTAATCTTTATCAAGANCCCTTTTCAAAATTCTTTTTCAG
TAAAGGATATGATTTCAACAAAAAAAATAAAAACTCCTCTCGAGAGAAAT
ATCGTTTTACGACGACAAGAACATGAGCCATGTGTGGCGTTTCACGCCTT
TATTCCCACCACTCGTTACTCATATGCAGGCATATTTCTGATTTCTATGC
AAGCCTGTTTCTACAAAGTTAGTTCCCGGACCGCCTCGGCTACATTTACC
AACCCTTGCTTCTTTATTAATATCACTATTATTTCTACGTTTCACCCCTG
TTTCCTTTCTCTTTTTTCTAACAGAGCCCCTGTTCTTTGTTATTATTTCG
CCCCCATTTCCCTCTATTTATT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGGGGGGGGAGGTACACGA
CACGGACAATGGACATATTTAACCCCATAGGGAGGGAGGGAGGGAGAGAG
AGAGAAACAAACAAACCTACCTATCAGATTGGGGCTCCCAGGTTTTGTGT
TTTGTTTTGTTTTTGCAATTCCCAACATGCTATTAACTCAGCCCATCAGT
GGTCCCAGCCCTTCCCCAAGTGTTGCCACTGCCCAGCAGGTACCAATCAG
GAGCCCAGCCCGGCTCGACTTCTGTTAGAAGCCTACTCTCTAGGGTGGTC
AGACTTCTTTAGGTTCCTTAANGGCGGGGCCCTTTTCTTCTTTTCTAGGG
TGGTCAGACTTCTACACCACACAAAAATAAAAAATGTTCTTTTCTTGGAG
TAGGTTTTTCTCACTGTCTCCACACTTTTCTGTCCCTAGATACTACCTTA
AGAAAGTGAGTGACGAGTTTGACTGTGTCGTGCTATTTGATTACATTCGG
TCCGTATGACGCCTCCTCTGCCTTGCCTTCTCTGATATCATTTTTGTCCC
CTGTTGCAATCTCCCCTATTTTACTTTTTGGCTCTTTACTTTTTTGTTCC
CACTCCCCTCGTTTTTTCGCTGTATTTCTATTTATCTCTCGTCGTGCCAT
TCCCTTGATCTCTCCGGTAGCCCTCCACTGCGTTCACTTTCTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_i10.g1 MSMg01no172_i10.g1 CHROMAT_FILE:
MSMg01no172_i10.g1 PHD_FILE: MSMg01no172_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:01 2005
         (287 letters)



>mm_chr17_26331316_26332007
          Length = 692

 Score =  422 bits (218), Expect = e-122
 Identities = 274/306 (89%), Gaps = 27/306 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaca--ggggggggaggtacacgacacggacaatggacat--at--ttaaccccat- 53
           |||||||  ||||||||||||||||||||||||||||||||||  ||   |||    || 
Sbjct: 187 caggacagtggggggggaggtacacgacacggacaatggacataaataaataa----ata 242

                                                                       
Query: 54  ---agggagggagggagggagagagagag--------aaacaaacaaacctacctatcag 102
              ||||||||||||||||||||||||||        |||||||||||||||||||||||
Sbjct: 243 gggagggagggagggagggagagagagagagagaaacaaacaaacaaacctacctatcag 302

                                                                       
Query: 103 attggggctcccaggttttg-----tgttttgttttgtttttgcaattcccaacatgcta 157
           ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||
Sbjct: 303 attggggctcccaggttttgtgttttgttttgttttgtttttgcaattcccaacatgcta 362

                                                                       
Query: 158 ttaactcagcccatcagtggtcccagcccttccccaagtgttgccactgcccagcaggta 217
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 363 ttaactcagcccatcagtggtcccagcccttccccaagtgttgccactgcccagcaggca 422

                                                                       
Query: 218 ccaatcaggagcccagcccggctcgacttctgttagaagcctactctctagggtggtcag 277
           ||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||
Sbjct: 423 ccaatcaggagcccagcccagctcgacttctgggagaagcctactctctagggtggtcag 482

                 
Query: 278 acttct 283
           ||||||
Sbjct: 483 acttct 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 692
Length adjustment: 9
Effective length of query: 278
Effective length of database: 683
Effective search space:   189874
Effective search space used:   189874
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)