BAC Information

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BAC

Clone NameMSMg01-175B18
Chromosome17 (Build37)
Map Location 76,986,130 - 76,986,755
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668787, LOC100043885, LOC100043886
Downstream geneEG624348, LOC545234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175B18.T7 (MSMg01no175_b18.b1)MSMg01-175B18.TJ (MSMg01no175_b18.g1)
ACCAG370199AG370200
length693709
length of high quality
(start - end)
629 (45 - 673)312 (398 - 709)
definitionCHROMAT_FILE: MSMg01no175_b18.b1 PHD_FILE: MSMg01no175_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:07 2005CHROMAT_FILE: MSMg01no175_b18.g1 PHD_FILE: MSMg01no175_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGTGCACAATAGGTATTTCCTGTGTGGTGTCCAAGATGCATAGGT
TATTATATTTGCGAAGGTGAATAAGAGTAGATCACTGTGTTGATTAGTTG
TGTACCACTTACATTATACATTACAGATTATAACTGCCCTACACAGGCCA
ATACCCTTATTATCTTCATGATACTATAGAGTTATTAGACACCTCTCTTC
TGAGGTCACAGTAACCTGAGTGACTTGTCATATGGCTCAACCTTGTGTGA
GCTCATTCTTTTGACAGCTTTAAGTTCTTTCTCAGAAAACAGTCTTCACT
TCTGTATTATAGAGGTTAAACACTGCATTATTACCATGATTGCCTAGGTG
CTTGGTACAGCAAGCTCATGGTTGGATGGCACATCCAGTTACCCAGGGCA
CTGTACTTGGGAAGGCCAGGGCATAGTTGTTTGAGAGGTTATTATCTTGA
AATATTTAATCATTTTAAACAATTTTTTTCATTCTACACTGGCCATCAAA
AACTCGGTGGCTAATATTTACACTTGAAGTAATTTCAGGGACTGAATGTA
TGACCTGGCTCCTTAGCACAAAATCCCTGATACTTGAATATGAGACTCAA
TAATAAGACCCAAAAGGAAGGCTCAGAGCCAGGCTTGTTCACA
NNCCCGCCCCNNNCCCTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTATT
GTTTAACTATCCAAATTGACAAATCTAAAGCTGGTGTGTTGACTTTCCAA
TTGGCTTGGGACTTCCCAACTAATCTGGGATTTTGGAGTATTCAGAATAT
ATGAAGAATGAATAAAAAAATAAAACAAAACAGGAAGTAAAATCATCACA
GATTCTTGACTATGTAAGTAAAGAATTAATTAAATCAGTTCAAAATGGAA
AAGGGATAAATGAGTAAAGATCTGCAGACTCAAGAGGCTCTCTGAGAGGA
CAGCCTCTGGAACTCGCTGATTATTCTTTCTAGCCGCCCCCCGCCCTTTC
TTTTTTCTTTTTCTCTTTCTTTTTCTTTTTCTTTTTCTTTTTCATTTTCT
CTTTCTCTTTCTTTTTCTTTTTTTCTTTTTCTTCTTCTTTTTTTCTTTTT
CTTTTCCTTTTTCTTTTTCTTTCATTAGATATTTACTTTATTTACATTTC
AAGTATTATCCCCCTTCCTAGTTTCCCCTCCAAAAATCCCCTATCCTTCC
CTCCTTCCCCTGCTCCCCAACCCCCACACTCCTGCTTCCCATCCCAGGCA
TTCCCCTATATTGGGGCAAAGAGCTTTCACAGGACCAAGGGCCTTTTCTC
CCATTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_b18.b1 MSMg01no175_b18.b1 CHROMAT_FILE:
MSMg01no175_b18.b1 PHD_FILE: MSMg01no175_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:07 2005
         (629 letters)



>mm_chr17_76985927_76986955
          Length = 1029

 Score = 1141 bits (590), Expect = 0.0
 Identities = 617/626 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgtgcacaataggtatttcctgtgtggtgtccaagatgcataggttattata 63
           |||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgtgtagaataagtatttcctgtgtggtgtccaagatgcataggttattata 263

                                                                       
Query: 64  tttgcgaaggtgaataagagtagatcactgtgttgattagttgtgtaccacttacattat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttgcgaaggtgaataagagtagatcactgtgttgattagttgtgtaccacttacattat 323

                                                                       
Query: 124 acattacagattataactgccctacacaggccaatacccttattatcttcatgatactat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acattacagattataactgccctacacaggccaatacccttattatcttcatgatactat 383

                                                                       
Query: 184 agagttattagacacctctcttctgaggtcacagtaacctgagtgacttgtcatatggct 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 agagttattagacacctctcttctgaggtcacagtaacctgagtgacttgtcttatggct 443

                                                                       
Query: 244 caaccttgtgtgagctcattcttttgacagctttaagttctttctcagaaaacagtcttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaccttgtgtgagctcattcttttgacagctttaagttctttctcagaaaacagtcttc 503

                                                                       
Query: 304 acttctgtattatagaggttaaacactgcattattaccatgattgcctaggtgcttggta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acttctgtattatagaggttaaacactgcattattaccatgattgcctaggtgcttggta 563

                                                                       
Query: 364 cagcaagctcatggttggatggcacatccagttacccagggcactgtacttgggaaggcc 423
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagcaagctcatggttggatggcacatccagttacccagggcactgtacttgggaaggcc 623

                                                                       
Query: 424 agggcatagttgtttgagaggttattatcttgaaatatttaatcattttaaacaattttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agggcatagttgtttgagaggttattatcttgaaatatttaatcattttaaacaattttt 683

                                                                       
Query: 484 ttcattctacactggccatcaaaaactcggtggctaatatttacacttgaagtaatttca 543
           || ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 684 tttattctacactggccaacaaaaacttggtggctaatatttacacttgaagtaatttca 743

                                                                       
Query: 544 gggactgaatgtatgacctggctccttagcacaaaatccctgatacttgaatatgagact 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gggactgaatgtatgacctggctccttagcacaaaatccctgatacttgaatatgagact 803

                                     
Query: 604 caataataagacccaaaaggaaggct 629
           ||||||||||||||||| ||||||||
Sbjct: 804 caataataagacccaaagggaaggct 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)