BAC Information

Click to search

BAC

Clone NameMSMg01-175P08
Chromosome17 (Build37)
Map Location 50,910,996 - 50,911,284
singlet/doubletsinglet
Overlap geneTbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175P08.T7 (MSMg01no175_p08.b1)MSMg01-175P08.TJ (MSMg01no175_p08.g1)
ACCAG370798AG370799
length744753
length of high quality
(start - end)
307 (108 - 414)73 (119 - 191)
definitionCHROMAT_FILE: MSMg01no175_p08.b1 PHD_FILE: MSMg01no175_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:09 2005CHROMAT_FILE: MSMg01no175_p08.g1 PHD_FILE: MSMg01no175_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNCCTTTTTTTTNNATNTCCCGCCCCCCCCCCCCCACCCCCNNCTGN
CCNNNCNCTGTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTTGTTTAGCTCTATACCCCATTTTTTAATGGG
GTTATTTGAATTTCTGGAGTTTTAGAAGCTCCCCAGTGTCTTCAAGGACC
CACACTTTCTCTGTACTATGCTCAAGATAGGCTCTACCTGGGTTCAAAGC
AAAATCACCACAGCATTTAAAGACACCATATCCAGAGAAGAAAGAATCTG
TGTATTCCTGGGCATCCTCCTAACTGTTCATACGGAATCTCCAGTTAAGC
TTGAAGTAAGCATTGAGTTTGTTTGTTCGTTCATTTGTTTGAATCAGTAT
CAAGCAATATGTGTTTTATGCTCCCCCCCCTCTTTATCTGAAATTCAACT
TTAATTGTTCTGTTTCTTATTGCGAGTAGAGAATGGCTTGGGTTGGGTTT
GGCTTGGGTTGCCTTGGGTTGGGTTTCCCCAGTGTCACAAGTTAGAGTAA
TTTGAGAAGAGGAAGCTTTACCTGAGAAAATGCCCCAACCAGATTGGCCT
GTGGGCACATCTAGTGGGAAGTGTCCTGACTAATGATTGCTGCGGCAGGC
CCCAGATTACCGTGGACAGTGCCGCCCACGGGTTGGTAATTCTGAATGCC
GCGGCTAACACCGTATGATTGACTAGGCTACCCAGCACCTCTCC
CCCTTTCGATGATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGGCAGTGTGAGGCCATG
GGTTTGATAGGGCCTTCCCAGTGTTGCTTCTTTGTTTAGAACTTTGGAAT
TACTTTTTAAAGGGAAAGGAAGGTTTACTTATTTTTTCAAATGTTCTATT
TACCTGAATGTTATCAAATACTCATCTAGGGAGACAGACACTCACTATTT
ATCACAACCCTAAAGCTCACGAAATAAGCTCATGCCTTTTGCTAAACAAC
TCTAGAGTATTGCAGCCTTTTATTCTTCCTGTGCAAAACGCAGACAAATC
AGCTCCCATGCCCTTTTTTTTTCTCACCCCCCCCCCACGAATGTATTCTT
CCTTTAATTCCTTCAAGCCTTATCTCCCATATTTACACTAAAAAATGTTT
TCAACTTTTTACAAATGTTTTTCCCATGCGTGTTTCCGCGCTGTGTGCAC
GTGTGCCCCTGCCCCGTGCTTCCTCGCCCCTGGTGCTATTTCATACACTG
CTTCCCCATTCCCTCTATACTTGCTCCAACCTTCGAATTACCTACCCCCC
TTCCTTAATAGAACCTGCCCACTCCCGCCGTTCACTTTCCCCTCTTATCC
CCCCGAGTCCTCCCTCCCCTCCCCTTAAACCATCCCCCACCATTCATAAT
ACTTATTCCCCATCTTTTCCTCCCAACCCCCTCTTACTCCCCCTTCCTTT
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_p08.b1 MSMg01no175_p08.b1 CHROMAT_FILE:
MSMg01no175_p08.b1 PHD_FILE: MSMg01no175_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:09 2005
         (307 letters)



>mm_chr17_50910642_50911348
          Length = 707

 Score =  489 bits (253), Expect = e-143
 Identities = 284/303 (93%), Gaps = 15/303 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtttagctctatacccca-ttttttaatggggttatttgaatttctggagt 63
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 643 gaattctttgtttagctctataccccatttttttaatggggttatttgaatttctggagt 584

                                                                       
Query: 64  tttagaagctccccagtgtcttcaaggacccacactttctctgtactatgctcaagatag 123
           ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 583 tttagaagctccccagtgtcttcaaggactcacactttctctgtactatgcttaagatag 524

                                                                       
Query: 124 gctctacctgggttcaaagcaaaatcaccacagcatttaaagacaccatatccagagaag 183
           |||||| ||||||||||              ||||||||||| |||||||||||||||||
Sbjct: 523 gctctatctgggttcaa--------------agcatttaaaggcaccatatccagagaag 478

                                                                       
Query: 184 aaagaatctgtgtattcctgggcatcctcctaactgttcatacggaatctccagttaagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaagaatctgtgtattcctgggcatcctcctaactgttcatacggaatctccagttaagc 418

                                                                       
Query: 244 ttgaagtaagcattgagtttgtttgttcgttcatttgtttgaatcagtatcaagcaatat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttgaagtaagcattgagtttgtttgttcgttcatttgtttgaatcagtatcaagcaatat 358

              
Query: 304 gtg 306
           |||
Sbjct: 357 gtg 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)