Query= MSMg01no176_b24.b1 MSMg01no176_b24.b1 CHROMAT_FILE:
MSMg01no176_b24.b1 PHD_FILE: MSMg01no176_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:29 2005
(422 letters)
>mm_chr17_54684249_54685072
Length = 824
Score = 636 bits (329), Expect = 0.0
Identities = 381/399 (95%), Gaps = 2/399 (0%)
Strand = Plus / Plus
Query: 16 gaattctactccagtcttgacttacagaatacacagctatgt--ctctttatttgtgttg 73
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 216 gaattctactccagtcttgacttactgaatacacagctatgtatctctttatttgtgttg 275
Query: 74 ccttattttcaaagaggagagttcaatatttcatattcttggttagcattgtttgagtga 133
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ccttattttcatggaggagagttcaatatttcatattcttggttagcattgtttgagtga 335
Query: 134 atttctgctccctgttcagcagggctgccctacaaggaaaagtagttagcacaattgata 193
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 336 atttctgctccctgttcagcagggctgccctacaaggaaaagtaggtagcacaattgata 395
Query: 194 caaagacaaagaggctttctttgtctgctggatttttcagtagcacaggcatttgaaaaa 253
|||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 396 caaagacaaagaggctttttttgtctgccggatttctcagtagcacaggcatttgaaaaa 455
Query: 254 aatctatataacaaaggacaagagctctagatattgcaaagggtagcctgttctcctata 313
|| |||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||
Sbjct: 456 aaactatataacaaaggacaagagctctagatattgcaaggggtagcccgttcccctgta 515
Query: 314 ccataacttgtgtaaacttgggaaatctacatactattaaatcctagttttctactttgt 373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ccataacttgtgtaaacttgggaaatctacatactattaaatcctagttttctactttgg 575
Query: 374 taaatgcttaagtgccaacctcacaaaaaactagaagag 412
||||||||||||| |||| |||||||||||||||||||
Sbjct: 576 aaaatgcttaagtggcaacatcacaaaaaactagaagag 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 824
Length adjustment: 9
Effective length of query: 413
Effective length of database: 815
Effective search space: 336595
Effective search space used: 336595
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_b24.g1 MSMg01no176_b24.g1 CHROMAT_FILE:
MSMg01no176_b24.g1 PHD_FILE: MSMg01no176_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:29 2005
(564 letters)
>mm_chr17_54817750_54818710
Length = 961
Score = 1000 bits (517), Expect = 0.0
Identities = 551/563 (97%), Gaps = 3/563 (0%)
Strand = Plus / Minus
Query: 2 gacatacttagaatccacatgccagggccagtttcatcaaactgaaaaataaaacttacc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 gacatacttagaatccacatgccagggccagtttcatcaaactgaaaaataaaacttacc 896
Query: 62 ttcttctccacaaagtttgtgggacattctgaagggcaagagttactcctcttggcacaa 121
||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 895 ttcttctccacaaagttcgtgggacattctgaaggggaagagttactcctattggcacaa 836
Query: 122 tcccatcaaattagataatgatcatggaactcattttgatagaaaaatatttaaatatct 181
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 835 tcccatcaaattagataatgatcatggaactcattttaatagaaaaatatttaaatatct 776
Query: 182 ttataaaatttggtctattacataaataaataacatagtattataaaggaattttaatga 241
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ttataaaatttggcctattacataaataaataacatagtattataaaggaattttaatga 716
Query: 242 tggcaattataattgaaaaaatagttgagtttttctgaaattataaaaacaatatgattt 301
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 715 tggcaattataattgaaaaaatagttgagtttttctgaaaggataaaaacaatatgattt 656
Query: 302 catcaactaaaagaaaaactattttatttgaaaaacccaatttttgactaaaagaacaga 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 655 catcaactaaaagaaaaactattttatttgaaaaacccaatttttgactaaaagaacaaa 596
Query: 362 gatataattcacaccccccgtaataaaactcaagacactgaactttctcacttaaattcg 421
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 595 gatataattcacaccccccgtaataaaactc--gacactgaactttctcacttaaattcg 538
Query: 422 atgcaactacatcaaaagcacattcatagggactttgaaaattctggatgttgctcacct 481
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgcaactacatcaaaaacacattcatagggactttgaaaattctggatgttgctcacct 478
Query: 482 tcaacttcatacacagaaatcgcacaacatactatcccatttctatcacattttatgttt 541
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 477 tcaacttcatacacagaaatcgcacaacatacta-cccatttctatcacattttatgttt 419
Query: 542 tcaatcactttaatattagatta 564
|||||||||||||||||||||||
Sbjct: 418 tcaatcactttaatattagatta 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 961
Length adjustment: 10
Effective length of query: 554
Effective length of database: 951
Effective search space: 526854
Effective search space used: 526854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
