BAC Information

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BAC

Clone NameMSMg01-176J01
Chromosome17 (Build37)
Map Location 46,349,311 - 46,349,555
singlet/doubletsinglet
Overlap geneXpo5
Upstream geneEG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh
Downstream geneRpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176J01.T7 (MSMg01no176_j01.b1)MSMg01-176J01.TJ (MSMg01no176_j01.g1)
ACCAG371226AG371227
length1,2201,237
length of high quality
(start - end)
270 (137 - 406)383 (71 - 453)
definitionCHROMAT_FILE: MSMg01no176_j01.b1 PHD_FILE: MSMg01no176_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:28 2005CHROMAT_FILE: MSMg01no176_j01.g1 PHD_FILE: MSMg01no176_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGTGCTTGNNNNAACACGGGGCGCTAAGACTCCTAAGGGAGAGGATCCG
CGGAATTCTCATCATATACTGGGGCCCTATAAAGCCCCCCNNNAANGNAN
AAAGAGGGNNNNGNCTCCTTTAAAACCCCCCTAGGNTTGAAACTACTTTT
GAGGCAGGGTAGGTCTCACACAAGGGCCTTTAAACTCTATCTAGCCGAAG
AGAACCTTATATCCTGATTTTTAAAATTTTTTTTGCCATGACCACCTAAA
TGCCACACCTGTCATTTGAAAATGTTAAGAGTAGCTGGGCTTGATGGCTC
ATTCACTTAATCCCAGAACTCAGAAGGCAGAGATGGTGTGGATCTCTGTG
AGTTCAAGGCCAGCCTGGTCTATATAGTGAGTTCCAGGACAGAAGGTGTG
GCCCTGTTTTTTTATGNGNGGCCTTGNAGGNATGGGCTGTAAGACCTCAT
CCTACCAGCCTAGAATTCAGCCTTCCACTAGCAGCCTTCAGATGAAGATG
TAGAACTCTCAGCTCTGCCTGCATCATGCCTGCCTAGATGCTGCCCTGCT
CCCACCTTGAGGATAATGGACTGAACCTCTAAACCTGTGAGTCAGCCCAA
CTAAATGTCCTTTATAAGACTTGTCTTGGTCATGGTGTCTGTTCACAGCA
GTAAAACCCTAAGTAAGCCATTCACATAGCCAAGGTTGACTTTGAACTTA
AAATCTAGCTGCCTTGGATGTAGCATCCTGTCCAAATTGAGATGGATCAG
AAGGTAAAGGCCCTGCTGCTAAGCCTGACTTCCTGAATTTGATGGTCAGA
GCCCACGCAGTGGGAGGAGAGAACTCATTCCCATAACTGTCCCGTGCCCC
CCATGTGTGTGCCATGGCACGAGTGTCCCACCCCACGAAAAAGCTTCTGA
AAACCAAAGCGGAACAACCTTACAGACCCCTTATCCGGGCTGGAGAGACG
GCCCAGCAGTCCAGAGCCCTGGCCTGCTCCTTCCGGGGGGCTCTGGCCTC
ATTGGCCCGCTACCCCAAGGGCAGTTCCAACCTCGGATGGTAAATCCCCT
TCCCCGAACTCCTCGGACGGCTTTTTCCCCGGCCCCCCTGGGAACCCTCA
CATCACTACTCACCTTCCCCCTCTCAACGAACCTTCTGTGCCGGGCGGGC
GTCCCACCTCTTCGGGCCGTCCACGCTAACAAACCGGCTCCTCCTCCCCG
GCTCTGCACGCCCCCCCATG
NNNAACGAGGCGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAGATCAGCCTGCCTCTGACTCCAGAGTT
CTGTACTTTGAGGCGTGTGCATCACATCAGCCAGCTCCCCCTCCCCCACA
GTCTCACGTATTTCAGACTAGTCTCAAATACACTGTGTCGCTGAGGGTTG
CCTTGGCTCCTGATCCTCCTGCCTCAACCTCTCAAGTTTGGGGTACAGGT
ATCCATTACCTTGCATGGCTCCGGAATGAGGTGCTGGGGTTGACCCAAGA
TCAGAAGGAGGGGCTGGTTCTGTCTTGCCAGGTGTGCTGAATAGTTTTAT
GTCAACTCGACAGAGCTAGATTCATCAAAGGGGAGTAAGCCTCAATTGAG
AATAACCCCTACATTAAGATCCAGCTGTAGGGCACTTGCTTAATTAGTGA
TTTTTTTTGCCCCCCCCCGCCCACTGTGGGTACTGCCATCAAAGAAGTGG
TGGTCCTGGGTTGTATAAGAAAACAGGCTAAGCAAGCCATGAGGAGCAAG
CAACCCCACCATGGCCTCTGCATCAGCTCCTGCCTCCAGGATCCTGCTCT
GTTTGAGTTCCTGTCCTGATTTCCTTCAGTGATGAACTGTGGTATGAAAA
AAAAAAATGTAAGCCAAATAAACCCTTTCCTCCCCAAGTTGCTTTGGCCA
TGGTGTTTCATCACAGTAAAAGAAACTGTAACTAAGACACAAGGCTTGTC
CCAGTCCCCACCCACAGGGGCCAGAGCAATTAGGAATTTGTGACACCCCT
GTGTGCTCCCTCTTTGCTGCTCACTAAGTCCCCTCTCAGCTTCAGCCTCC
CTGCCCACCACAACCACAGAAGAGAACTGTCCTTGGGAGCATCCCCTAAG
CCTACAAGCTTAAAGAATCACTCGGACTCTTTAAGTCCAGTGCCACGTGG
CAAGTGCCCTAACTCATCTCCCTTCTGCCTTTCTCCGGCTCCGGGGTAAT
AGGGCTTGCTTCTTGGAAACCCTCTGAAACTTTTTTTGTGTCCGGCAGAA
ATGGATCAACACCCCCCCCTTAGCTTGGTATTCTGCCCTCCCAAAAAAAC
CCCTCTCTATCGTTAAAACATTGTCCTATCATTTTTCCTTACTCCATAAC
TTATCTTGTTCTATCCATGTTATCCCCTCTCTTGAAACTTCATGGCTTAT
CCTCCCTCTTAGATCATCTACATATTCTCCCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_j01.b1 MSMg01no176_j01.b1 CHROMAT_FILE:
MSMg01no176_j01.b1 PHD_FILE: MSMg01no176_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:28 2005
         (270 letters)



>mm_chr17_46349248_46349916
          Length = 669

 Score =  397 bits (205), Expect = e-115
 Identities = 239/257 (92%), Gaps = 12/257 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaaactacttttgaggcagggtaggtctcacacaagggcctttaaactctatctagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttgaaactacttttgaggcagggtaggtctcacacaagggcctttaaactctatctagcc 249

                                                                       
Query: 61  gaagagaaccttatatcctgatttttaaaattttttttgccatgaccacctaaatgccac 120
           ||||||||||||||||||||||||||  |||||||||| ||||||           ||||
Sbjct: 248 gaagagaaccttatatcctgattttt-taattttttttcccatga-----------ccac 201

                                                                       
Query: 121 acctgtcatttgaaaatgttaagagtagctgggcttgatggctcattcacttaatcccag 180
           ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 200 acctgccatttgaaaatgttaagagtagctgggcatgatggctcattcacttaatcccag 141

                                                                       
Query: 181 aactcagaaggcagagatggtgtggatctctgtgagttcaaggccagcctggtctatata 240
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 140 aactcagaaggcagagatggggtggatctctgtgagttcaaggctagcctggtctatata 81

                            
Query: 241 gtgagttccaggacaga 257
           |||||||||||||||||
Sbjct: 80  gtgagttccaggacaga 64


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 669
Length adjustment: 9
Effective length of query: 261
Effective length of database: 660
Effective search space:   172260
Effective search space used:   172260
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)