BAC Information

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BAC

Clone NameMSMg01-177B06
Chromosome17 (Build37)
Map Location 25,717,161 - 25,717,447
singlet/doubletsinglet
Overlap geneTmem112
Upstream genePkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8
Downstream geneLOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177B06.T7 (MSMg01no177_b06.b1)MSMg01-177B06.TJ (MSMg01no177_b06.g1)
ACCAG371575AG371576
length712708
length of high quality
(start - end)		315 (46 - 360)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no177_b06.b1 PHD_FILE: MSMg01no177_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:34 2005CHROMAT_FILE: MSMg01no177_b06.g1 PHD_FILE: MSMg01no177_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCCCTTGCCCACCTGACCTGTGGAGTGAAGGCTATTACGGTCAG
GCTAAGCAGAAACCTTTAGAGCTGCCTCTGCCAGGTACAACTGTGAATCC
AAAGCAGTATTACATCCTCTGGAGGGAACATTTTGGACTCTATATTGATA
GGCAGCCATTGTTAGTCTAGCTGGACCACAGCCTTTAAGCCATTCTAATA
TATCTATTCTATAAGTTCTGTTCCTCTAGAGAACGTGACTAATTTATATA
GTGTGTGTTTGTAATCTGAGTACTGGGGAGGGAGAGTCAGGTGGATCCCT
GGAGCCGATTGGCTGCTCACCCCACCCTACTCGGGGACCCTCAGGTCCTA
GAGTCTGTCTCCAAAACTAAAGCAGCTGGCTCCTGAGGAACAACACCCAA
GTTGATGCCTAGCCTCCACACACATGCATGTACACCCACACGTATGTACC
TGGGCATGCATGCTGTACACACACATGCAAAATAAACAGATAAATGATAT
TAGTGTACACAACACTGTTGGATTAGAGGTTTCATGGCTCACAATGAGAT
TTTTCTGTTGTTTTGAACCTGTAGATCATGCCCATATTAACCACCAGAAT
GTTTCCGTGCGCGATGGCACAAGCCTTTAATTTCCTTTACTTGTTAACCA
GATTCTTTTGAC

CGATGATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCACAGAGATCTGCCTGCCTCTGCCT
CCAGAGTGCTGGGATTAAAGGTGTGGACCACTACACTGGGCACTGATGTC
CCCTCAGCTCCTGGCCTGTTATTGCTACCCACAGTAGTGGGCCAGGAGAT
GTCATATAGAACCAGTTCCAAACAACTCACTATAGTGACACCTGAACCCC
CAGCTGAGGCTGAGCGCCTGTCTACTCACACTGGGCCTGCCCTGCCTGTG
GCCATGAGACGGAGCTCAGGCTTAAAACCTGTGGACATCTGTCTGGTGGG
AGTAACTGTGTTTTCCTCCCCCTCACCCCAATTCCTAATACCTAGGGGGT
GGTCTAGTGACTATGTGGACACTGAAGAACATGGCCCAGCCTTTTAGTAA
GGAAGGCAAAACTGAGTGCTAAGTAAGCCCCAGGGCCCAGGACATGCCAG
GCTCATGCATGGTGTACCTTCGGCATCTTTCAGAAGAGTCATCTTAGACT
TTGGGCTGTGTCCATGTGGCTCTCATGTGGAGAGTCAGGCTCATGTGCAT
TTTTGTGTGACGGACTGGCTACTTCCGGGTGCATTGGAGAACTGGAGTTC
TTAATCAAACGGTCCCGTGTGTATGCCTGCCTGAGTTTCCACTTATTCTC
TCTAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_b06.g1 MSMg01no177_b06.g1 CHROMAT_FILE:
MSMg01no177_b06.g1 PHD_FILE: MSMg01no177_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:34 2005
         (287 letters)



>mm_chr17_25716961_25717647
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcacagagatctgcctgcctctgcctccagagtgctgggattaaaggtgtggaccacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcacagagatctgcctgcctctgcctccagagtgctgggattaaaggtgtggaccacta 260

                                                                       
Query: 61  cactgggcactgatgtcccctcagctcctggcctgttattgctacccacagtagtgggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgggcactgatgtcccctcagctcctggcctgttattgctacccacagtagtgggcc 320

                                                                       
Query: 121 aggagatgtcatatagaaccagttccaaacaactcactatagtgacacctgaacccccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagatgtcatatagaaccagttccaaacaactcactatagtgacacctgaacccccag 380

                                                                       
Query: 181 ctgaggctgagcgcctgtctactcacactgggcctgccctgcctgtggccatgagacgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaggctgagcgcctgtctactcacactgggcctgccctgcctgtggccatgagacgga 440

                                                          
Query: 241 gctcaggcttaaaacctgtggacatctgtctggtgggagtaactgtg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcaggcttaaaacctgtggacatctgtctggtgggagtaactgtg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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