BAC Information

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BAC

Clone NameMSMg01-178N10
Chromosome17 (Build37)
Map Location 37,607,892 - 37,608,200
singlet/doubletsinglet
Overlap genenone
Upstream geneH2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109
Downstream geneH2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178N10.T7 (MSMg01no178_n10.b1)MSMg01-178N10.TJ (MSMg01no178_n10.g1)
ACCAG372807AG372808
length739741
length of high quality
(start - end)		316 (45 - 360)573 (77 - 649)
definitionCHROMAT_FILE: MSMg01no178_n10.b1 PHD_FILE: MSMg01no178_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:42 2005CHROMAT_FILE: MSMg01no178_n10.g1 PHD_FILE: MSMg01no178_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTTTGTCCTTGCCAGTCTGATGCACCATACTTCTTCATATGTAG
AAGTCCATTCTGTGTGGACTCAGGTATAGGCCACAAGTCGGCATAATGAG
CCTAGCAGTAGGGAGCACCACTGTTCCATATGTTCTTTTACAGCCTCTGT
TTTAATTATGGTCTCTATTGCTATGATAAAACACTATGACCAAAAACAAC
TTGAGGAAGAAATGGTTTATTTCACTCACAGATCCATATTAAGAATTCAT
CATTGAAAACAGATTCTATGTGGCTATTTCCCAAGGATTACTCAGCTTCA
CAGATAATAATAGGACTAACATAGAAAGAAAAGGGGTTTGGAGAGTTGGC
TTATTGGTTAAGACCACCAGTTGCTCTTCCAAAAAAAATAAAAAAAAAAA
AAAAAACCCCGGGTTCAATTCCTAGCATCCACATGACAGCTCACAATTGT
CTATAATAACAGTTCCAGGGGACCCAACACCTTTACACAGACATGCATGC
AAGCAAAACACCTATGCACATAAATAAAAATAAATTAATCATTAAAACCC
TAACAAACAAACGAACTAAAAAACCCCAAACAAACAAAAACCAGAAAGAC
TGGGGAGATGTTGGCAACAGTATAGGATATTACTCAGTCTTTCAGATAAA
AATTGGCGATGTCGATTCCTGGAACTCCTTTTGATAAGC

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACAGGAGAGAAACCGTACAAAT
GCAGTGAATGTGACAAATGCTTTACCCGAAAATCACATCTTAGTATTCAT
CAGAGAATTCATACAGGAGAGAAACCGTACAAATGCAGTGAATGTGACAA
ATGCTTTACCCAACAATGCCATCTTAGTATTCATCAGAGAATTCATACAG
GAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACCCAACAA
TGCCATCTTAGTATTCATCAGAAAATTCATTCAGGAGAGAAACCTTATAA
ATGTAATGAATGTGACAAATGCTTTACATGAAAATCTCATCTTAGTATTC
ACCAGAGAATTCATACAGGAAAGAAACCTTACAAATGCAGTGAATGTGGG
AAATGCTTTACTGACAAACTCACTCTGAGAAGGCATCAGAGAATTCAGAC
AGGAGAGAAACCTTATAAATGTAGTGAATGTGACAAATGCTTTACTGAGA
AAGTTAATCTGAGAAGGCATCAGAGAACTCATACAGGGGAGAATTCTTAC
AAATGTATTGAATGTGACAAATGTTTTGCCCAGAAATCCTATCTTGTTTT
TAATCACAGAAATCATACATTAAAGAAGCCTTACCAATGCAGTCAATGTG
ACAAATGATTTTCCCACCAACTTAGTCTGAGAAAGCACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_n10.b1 MSMg01no178_n10.b1 CHROMAT_FILE:
MSMg01no178_n10.b1 PHD_FILE: MSMg01no178_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:42 2005
         (316 letters)



>mm_chr17_37607848_37608563
          Length = 716

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttttgtccttgccagtctgatgcaccatacttcttcatatgtagaagtccat 64
           ||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 353 gaattctcttttgtatttgccagtctgatgcaccatgcttcttcatatgtagaagtccat 294

                                                                       
Query: 65  tctgtgtggactcaggtataggccacaagtcggcataatgagcctagcagtagggagcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tctgtgtggactcaggtataggccacaagtcggcataatgagcctagcagtagggagcac 234

                                                                       
Query: 125 cactgttccatatgttcttttacagcctctgttttaattatggtctctattgctatgata 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tactgttccatatgttcttttacagcctctgttttaattatggtctctattgctatgata 174

                                                                       
Query: 185 aaacactatgaccaaaaacaacttgaggaagaaatggtttatttcactcacagatccata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 aaacactatgaccaaaaacaacttgaggaagaaatggtttatttcactcacagatccata 114

                                                                       
Query: 245 ttaagaattcatcattgaaaacagattctatgtggctatttcccaaggattactcagctt 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 113 ttaagaattcatcattgaaaacagattctatgtggctatttctcaaggattactcagctt 54

                    
Query: 305 cacagataa 313
           |||||||||
Sbjct: 53  cacagataa 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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