Query= MSMg01no178_p10.b1 MSMg01no178_p10.b1 CHROMAT_FILE:
MSMg01no178_p10.b1 PHD_FILE: MSMg01no178_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:51 2005
(644 letters)
>mm_chr17_75348763_75349805
Length = 1043
Score = 1046 bits (541), Expect = 0.0
Identities = 614/659 (93%), Gaps = 34/659 (5%)
Strand = Plus / Plus
Query: 5 gaattcttcatatgcatgtgcctttaggacgttgactattcaaaccaaaaattgatagaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gaattcttcatatgcatgtgcctttaggacgttgactattcaaaccaaaaattgatagaa 244
Query: 65 ctgaaaaccgccagaaataaaaagccttagttagatttccaatatttgccccttagtgtt 124
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctgaaaaccgagagaaataaaaagccttagttagatttccaatatttgccccttagtgtt 304
Query: 125 tgatagaacaacttaaaag---aaaaaaaag----------------aagaaaatccaag 165
||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 305 tgatagaacaacttaaaaggaaaaaaaaaagaaagaaagaaagaaaaaagaaaatccaag 364
Query: 166 ggagttgaagaaaagtgaaatgaagatgtgttcctcctaaaaagggtaggataaagcaac 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggagttgaagaaaagtgaaatgaagatgtgttcctcctaaaaagggtaggataaagcaat 424
Query: 226 cacatcttgtatggtcttaaagcctatccctttaaactgtgtggcctctttcacttgatg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cacatcttgtatggtcttaaagcctatccctttaaactgtgtggcctctttcacttgatg 484
Query: 286 ctatttctggccattgtgtttaggagccattgtgttttctgcttctctcatctgctcttt 345
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 485 ctatttctggccgttgtgtttaggagccattgtgttttctgcttctcttatctgctcttt 544
Query: 346 agtgtccatgtgccttctctgagattatttagttatttaactttttattgattgtgagtt 405
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 545 agtgtccatgtgccttctctgagattatttagatatttaactttttattgattgtgagtt 604
Query: 406 ttacatcatgaattccaatcccacttatctcctctccccctcatatctgccctttgccct 465
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tcacatcatgaatcccaatcccacttatctcctctccccctcatatctgccctttgccct 664
Query: 466 tgtaacctccccccaaaataaaatacacacacacacacacacacacactactaccaccac 525
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 665 tgtaacctccccccaaaataaaatacacacacacacacacac---------------cac 709
Query: 526 caccaccaccaccatcaccaccaccaccaccatcaacaacaacaaacaaagtataaaaaa 585
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 710 caccaccaccaccatcaccaccatcaccaccatcaacaacaacaaacaaagtataaaaaa 769
Query: 586 tgtcatcatggaagctgtagtgtgtcagtgtgacctacagcatatccctctgtctaaac 644
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 770 tatcatcatggaagctgtagtgtgtcagtgtgtcctacagcatatccctctgtctaaac 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space: 654922
Effective search space used: 654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_p10.g1 MSMg01no178_p10.g1 CHROMAT_FILE:
MSMg01no178_p10.g1 PHD_FILE: MSMg01no178_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:51 2005
(598 letters)
>mm_chr17_75491615_75492608
Length = 994
Score = 996 bits (515), Expect = 0.0
Identities = 577/601 (96%), Gaps = 10/601 (1%)
Strand = Plus / Minus
Query: 1 tctttccagagtcccaccaaatctcaaccaagctggatgtctcccacgtcagacagaaag 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 794 tctttccagagtcccaccaaatctcaaccaagctggatgtctcccatgtcagacagaaag 735
Query: 61 tgtgttacctcatggggaaaattcaaccatcggctgctttctcgccataggaaggacaag 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tgtgttacctcatggggacaattcaaccatcggctgctttctcgccataggaaggacaag 675
Query: 121 gaagcaaatctacttggcaataaaagagcaaaagaaaggacaagagagtataactttggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gaagcaaatctacttggcaataaaagagcaaaagaaaggacaagagagtataactttggg 615
Query: 181 aggaaaatggttttgaaaaagatatgatggtcaagctccaatggtacactctaaaagctt 240
| ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||
Sbjct: 614 -gaaaaatggttttgaaaaa-atatgatggtcaagctccaattgtacacactaaaagctt 557
Query: 241 gaataaactgtatttgaaagacccttaccacaggaatttcaaaaagaagtgctttcagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaataaactgtatttgaaagacccttaccacaggaatttcaaaaagaagtgctttcagac 497
Query: 301 aaactgccccagaaagaatgtctaaaatgcaactgagaatggtggatggaaagaacacgt 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 496 aaactgccccagaaagaatgtctaaaatgcaactgagaatggcggatggaaagaacacgt 437
Query: 361 ggagaaatctaagtgagcagattatacacagcatcaatggagcacctacatgtaagagtc 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggagaaatcgaagtgagcagattatacacagcatcaatggagcacctacatgtaagagtc 377
Query: 421 tcactctttggactattgaaaaagaacaacacaacctcgagggagcaccatcataatcca 480
|||||||| ||||||||||| ||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 376 tcactcttgggactattgaagaagaacagcacaatctcgagggagcaccatcgtaatcca 317
Query: 481 gtgtcctgagatcttctgttagatctccagcaaaaatacccaata---ctagcctttgct 537
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct: 316 gtgtcctgagatcttctgttagatctccagcaaaaatacccaatacctct-gccttcgct 258
Query: 538 agttaaaataacatatggtgacacacacacacacacacagatttaatgaaaaataaaaaa 597
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 257 agttaaaataacatatggtg----acacacatacacacagatttaatgaaaaataaaaaa 202
Query: 598 a 598
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 994
Length adjustment: 10
Effective length of query: 588
Effective length of database: 984
Effective search space: 578592
Effective search space used: 578592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
