Query= MSMg01no180_c23.b1 MSMg01no180_c23.b1 CHROMAT_FILE:
MSMg01no180_c23.b1 PHD_FILE: MSMg01no180_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:22 2005
(534 letters)
>mm_chr17_14570108_14571041
Length = 934
Score = 996 bits (515), Expect = 0.0
Identities = 530/535 (99%), Gaps = 2/535 (0%)
Strand = Plus / Minus
Query: 1 atagttttatccagaggtcaaggttatgtagtattgtcttaaatggaaaagagagggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 atagttttatccagaggtcaaggttatgtagtattgtcttaaatggaaaagagagggtga 675
Query: 61 tttggctcctcactcagacctacatttctgaaggtgtctcaaaccctgaacaccaccata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tttggctcctcactcagacctacatttctgaaggtgtctcaaaccctgaacaccaccata 615
Query: 121 tagggaggtcacagcctcccctacacaagagatctacagtctacttcatacaggagggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tagggaggtcacagcctcccctacacaagagatctacagtctacttcatacaggagggcc 555
Query: 181 acagtctataccatataagaggccacagtctataccatactggatgatcatagtctacat 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acagtctacaccatataagaggccacagtctataccatactggatgatcatagtctacat 495
Query: 241 catacaggagggtcacagtctccaccatgtaggagatcttagtgccattacagatggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 catacaggagggtcacagtctccaccatgtaggagatcttagtgccattacagatggaaa 435
Query: 301 tgttgaagatgttacacgtttcattgtttggaatgtccacactacacagagctaacggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgttgaagatgttacacgtttcattgtttggaatgtccacactacacagagctaacggtt 375
Query: 361 tcagaataaatttctgaccccagctcatccaaccttgaggcggtttgttttttctatgtc 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 374 tcagaataaatttctgaccccagctcatccaaccttgaggcggtttggtttttctatgtc 315
Query: 421 atgccgatatccaccctgatgatccaggcaggaagggattctgtgcccaaaatagaagtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atgccgatatccaccctgatgatccaggcaggaagggattctgtgcccaaaatagaagtc 255
Query: 481 tctttcttcctctgctgcgaaggcatcctgtgcatctcttcnag-tggaggggac 534
|||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 254 tctttcttactctgctgcgaaggcatcctgtgcatctcttc-aggtggaggggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_c23.g1 MSMg01no180_c23.g1 CHROMAT_FILE:
MSMg01no180_c23.g1 PHD_FILE: MSMg01no180_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:22 2005
(548 letters)
>mm_chr17_14418775_14419722
Length = 948
Score = 1029 bits (532), Expect = 0.0
Identities = 544/548 (99%)
Strand = Plus / Plus
Query: 1 aattcatagaaataaatgggcctctcagttcacaggagtatacgggactcacagtccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcatagaaataaatgggcctctcagttcacaggagtatacgggactcacagtccatg 260
Query: 61 gggatgtgtgggggccaggtttcttctggatgggtgtgtgatcttatgcaagtgactgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggatgtgtgggggccaggtttcttctggatgggtgtgtgatcttatgcaagtgactgaa 320
Query: 121 cctcttcggtcttacctatagaatgaggaagactacccagcatgtcctaagggttaaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcttcggtcttacctatagaatgaggaagactacccagcatgtcctaagggttaaagg 380
Query: 181 taacgtttgatgcactcagactacactcattctccaatccagattatgctgttggaaggg 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacatttgatgcactcagactacactcattctccaatccagattatgctgttggaaggg 440
Query: 241 agtttagaagccagttcttacactgttgtgtcattacggggtgtttgggtattagagtag 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttagaagccagctcttacactgttgtgtcattacggggtgtttgggtattagagtag 500
Query: 301 attccttgcctggcttagatgagagaaatcatgtgggctgtccaggcacatgggaagagc 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 attccttgcctggcttagatgagagaaatcatgtgggctgtccaggcagatgggaagagc 560
Query: 361 acgttcttccctttgtcctgcccatttgttctgggaatgagtaaactgattcacctcttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acgttcttccctttgtcctgcccatttgttctgggaatgagtaaactgattcacctcttg 620
Query: 421 gggaggaagtgtgcacggacagagccagccgacagagccagcctgtggatttttccaccc 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggaggaagtgtgtacggacagagccagccgacagagccagcctgtggatttttccaccc 680
Query: 481 ttctcatggcctggttgtgcacagatgttagcgttctttccagtgagtggagtgaggtga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctcatggcctggttgtgcacagatgttagcgttctttccagtgagtggagtgaggtga 740
Query: 541 ggagatgc 548
||||||||
Sbjct: 741 ggagatgc 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
