BAC Information

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BAC

Clone NameMSMg01-180D19
Chromosome17 (Build37)
Map Location 39,984,942 - 39,985,227
singlet/doubletsinglet
Overlap geneLOC672857
Upstream geneLOC100043297, LOC100043300, EG668200, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180D19.T7 (MSMg01no180_d19.b1)MSMg01-180D19.TJ (MSMg01no180_d19.g1)
ACCAG373774AG373775
length757753
length of high quality
(start - end)
316 (33 - 348)241 (58 - 298)
definitionCHROMAT_FILE: MSMg01no180_d19.b1 PHD_FILE: MSMg01no180_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:26 2005CHROMAT_FILE: MSMg01no180_d19.g1 PHD_FILE: MSMg01no180_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAGTAAG
TGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCG
CCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCC
CGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAAC
TTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAAC
CTGCGGAAGGATCATTAACGGGAGACTGTGGAGGAGCGGCGGCGTGGCCC
GCTCTCCCCGTCTTGTGTGTGTCCTCGCCGGGAGGCGCGTGCGTCCCGGT
TCCTGCCGCCCGCGTGTGGAGCGAGGTGTCTGGAGTGAGGTGAGAGAACC
CCCCCAAAAAAAAAAATACTTTTCTTTTGGGGGGGTTATCCCTCTCTCCC
CCCCCCTTTTTCTTTTATATTCTTCTCCCTCCCCCCCCCCCATCTTTTTT
TTTCCTTCTCCTCCTCTCTTATTTTTTTTTTCCCCTCCTTCTCTTCCCCT
TTTTTTATATTCTTTCCCCCCGCCCCCCCCTTTTTTTTTTTTTTTTCCCT
GTCTTTTCCCTTTTCCTTCCCTTTTTTTCCTCTTCCCCCCGTCCCCCTCC
CCCTTTTTCCCCTTTTTGACCTTGCCGCATTTTTGCCCTTTATCCCCCCT
CTCCCCCCCCCTCCTTCTTTCTACCCCTCCCCCCCCCTTTTTTCTCCCCC
CCCTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTT
CTGAGAAATTCACAGGGAAATCATCACTCAGGGACTTCAGGCAGAAAACT
AGCTAGTCCGCCTCTGGATAGACAAGGCTCAACAGTTCAGAGAACCAGGC
CATCGCAAATAGTTCACAGACCTGCAAGGAAGACATGCAGATCCCTGCCC
CCCACCCCACCCCTCCCTCAGCCCCACCCAAACATAGGGAGAAAAGGCAG
TGTGGGGGAGGGGGAGGTGCTGTGAGAGAATTTAGATAGCTCGAAGAAAT
AACTTTTTGGTTACTCCACCCATCTACTCACCTTATTGAGTATATTTTTT
TTTTCCCCCCCCGCCTCCCATAGGAGCGGAGGTTAGACTGTTTTCCCCTG
CTCCCCATTTATATAAAAAAAACACTTTTTGTCGGAGGCTGTATTATATG
GCTCCTCGTTTTTATACCCCCGTACGCCCTACCTGAAGACCCTTGATTTA
TTCCCCAGTCTCCCACATGTCGCATATATTCCATATCCCCATACTTTCAT
TGTAAGATTACCACATTTTCTGTTCCTTTTCCTCCCCTATATATATTCTA
TTTATTTAACCTCACGAACTATAATCTTTTCTGCCCCCCTTTGTCTTAGT
TTTTCTTTTTTTTTTCCCACCCTCTATACCCCTACGTTTATTCCCCACCC
ACTTATATTGTATCTACATTGTTTCTTGTCACACACCCTTTTTTTATTTT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_d19.b1 MSMg01no180_d19.b1 CHROMAT_FILE:
MSMg01no180_d19.b1 PHD_FILE: MSMg01no180_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:26 2005
         (316 letters)



>mm_chr17_39984739_39985454
          Length = 716

 Score =  474 bits (245), Expect = e-138
 Identities = 283/313 (90%), Gaps = 27/313 (8%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccagtaagtgcgggtcataagcttgcgttgattaagtccctgccctttgtaca 63
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccagtaagtgcgggccataagcttgcgttgattaagtccctgccctttgtaca 263

                                                                       
Query: 64  caccgcccgtcgctactaccgattggatggtttagtgaggccctcggatcggccccgccg 123
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 264 caccgcccgtcgctactaccgattggatggtttagtga---------------------- 301

                                                                       
Query: 124 gggtcggcccacggccctggcggagcgctgagaagacggtcgaacttgactatctagagg 183
                ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 302 -----ggcccacggccctggtggagcgctgagaagacggtcgaacttgactatctagagg 356

                                                                       
Query: 184 aagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacgggaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacgggaga 416

                                                                       
Query: 244 ctgtggaggagcggcggcgtggcccgctctccccgtcttgtgtgtgtcctcgccgggagg 303
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctgtggaggagcggcggcgtggctcgctctccccgtcttgtgtgtgtcctcgccgggagg 476

                        
Query: 304 cgcgtgcgtcccg 316
           |||||||||||||
Sbjct: 477 cgcgtgcgtcccg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)