Query= MSMg01no180_e08.b1 MSMg01no180_e08.b1 CHROMAT_FILE:
MSMg01no180_e08.b1 PHD_FILE: MSMg01no180_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:28 2005
(523 letters)
>mm_chr17_44506544_44507466
Length = 923
Score = 951 bits (492), Expect = 0.0
Identities = 513/520 (98%)
Strand = Plus / Minus
Query: 4 ggaattccttgtctagacgcaggaccccatgaaatattcctccttctatgttaacataga 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ggaattccttgtctagaagcaggaccccatgaaatattcctccttctatgttaacataga 709
Query: 64 actgccaatatatcagccttatttatgcagtcatttctagagaatctcacagcagacttc 123
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 actgccaatatatcagttttatttatgcagtcatttctagagaatctcacagcagacttc 649
Query: 124 ctggtatttgactcttacagtcttctgccccctcttccttgatgttccctgggccataca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctggtatttgactcttacagtcttctgccccctcttccttgatgttccctgggccataca 589
Query: 184 cgaaggagctgtgatgtacacacatagaagatggaatggtagctgggagaggctggaggg 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tgaaggagctgtgatgtacacacatagaagatggaatggtagctgggagaggctggaggg 529
Query: 244 aggaagtgatgtcatgcatgtgcttctatgtaattgtgagttgggccatatgtgtaccag 303
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 528 aggacgtgatgtcatgcatgtgcttctatgtaattgtgagttggggcatatgtgtaccag 469
Query: 304 gacaagcatgtgaaaatcagcagatagctttagatgtcacctcttgccttcccccacccc 363
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gacaagcatgtggaaatcagcagatagctttagatgtcacctcttgccttcccccacccc 409
Query: 364 acccccatttgagacagagactcttgctttgctgtggtgtacagcaggttagctggcctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 acccccatttgagacagagactcttgctttgctgtggtgtacagcaggttagctggcctt 349
Query: 424 tgagtttctggagattcccccgcctcagcctcccatctcatcacagtagccccgggcact 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgagtttctggagattcccccgcctcagcctcccatctcatcacagtagccccgggcact 289
Query: 484 gttttatgtggtctctggggattcaaattcaaatccttgg 523
||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gttttatgtggtctctggggattcaaattcaaatccttgg 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_e08.g1 MSMg01no180_e08.g1 CHROMAT_FILE:
MSMg01no180_e08.g1 PHD_FILE: MSMg01no180_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:28 2005
(289 letters)
>mm_chr17_44376170_44376856
Length = 687
Score = 499 bits (258), Expect = e-146
Identities = 284/302 (94%), Gaps = 16/302 (5%)
Strand = Plus / Plus
Query: 1 ttgtcgtcccctccctagctgattagaccaggaatttgtctcctcacagaagcctctacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ttgtcgtcccctccctagctgattagaccaggaatttgtctcctcacagaagcctctgcc 260
Query: 61 ccctctctcgttgacattttacagtttctccatctcatattttctgctccagtggccaca 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cc--ctctcgttgacattttacagtttctccatctcatattttctgctccagtggccaca 318
Query: 121 aagaatgttgcaaactcagagaatggaaactcccatggctgccctgagactcttgcgtga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 319 aagaatgttgcaaactcagagaatggaaactcccatggctgccctgagactcctgcgtga 378
Query: 181 gccctaccctgtttcctcagt--------------ccacttcctgttgctaagccacacc 226
||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 gccctaccctgtttcctcagtacagccgggagtctccacttcctgttgctaagccacacc 438
Query: 227 cccaccccaccccgtcccctccttccttgatactggctcaggaatttgaccacctggcag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cccaccccaccccgtcccctccttccttgatactggctcaggaatttgaccacctggcag 498
Query: 287 ga 288
||
Sbjct: 499 ga 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 687
Length adjustment: 9
Effective length of query: 280
Effective length of database: 678
Effective search space: 189840
Effective search space used: 189840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
