Query= MSMg01no180_o11.b1 MSMg01no180_o11.b1 CHROMAT_FILE:
MSMg01no180_o11.b1 PHD_FILE: MSMg01no180_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:15 2005
(364 letters)
>mm_chr17_4432668_4433431
Length = 764
Score = 574 bits (297), Expect = e-168
Identities = 345/361 (95%)
Strand = Plus / Minus
Query: 4 ggaattcactctgtaccccaggttggcctcgaactcagaaatccgcctgcctctgactcc 63
|||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 665 ggaactcactctgtagaccaggttggcctcgaactcagaaatctgcctgcctctgactcc 606
Query: 64 caagtgctgggattcaaggtgtgctccaccaccactctgcttttatagtattttctcatg 123
|||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 605 caagtgctgggattaaaggtgtgctccaccaccaccctgcttttatagtattttttcatg 546
Query: 124 tctggttctttttacttagaaataactttattacaaatcaattgtataaatgtcatttat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tctggttctttttacttagaaataactttattacaaatcaattgtataaatgtcatttat 486
Query: 184 acaagtgactcatccatttagatctatacgagttctgtcttgagtgatcaatccttggag 243
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 485 acaagtgactcatccatttagatctatatgagttctgtcttgagtgatcaatccttgaag 426
Query: 244 gctgggaaggctcagtagtttccttttggttctctcaacattggatgacatctgaactca 303
||||||||||||||||||||||||||||| | | |||||||||||||||| ||||||||
Sbjct: 425 gctgggaaggctcagtagtttccttttggggcacacaacattggatgacatttgaactca 366
Query: 304 agttaggatgaattggaaaaaagctacacattgttgaaatggagcacacgtcatggtcat 363
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 365 agttagtatgaattggaaaaaagctacacattgttgaaatggagcacacatcatggtcat 306
Query: 364 g 364
|
Sbjct: 305 g 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space: 268025
Effective search space used: 268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_o11.g1 MSMg01no180_o11.g1 CHROMAT_FILE:
MSMg01no180_o11.g1 PHD_FILE: MSMg01no180_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:15 2005
(287 letters)
>mm_chr17_4268010_4268698
Length = 689
Score = 497 bits (257), Expect = e-145
Identities = 282/291 (96%), Gaps = 6/291 (2%)
Strand = Plus / Plus
Query: 1 acactagtgttctcctagaagagactccccc--cacacagagcctcccaggccaaccaga 58
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 201 acactagtgttctcctagaagagactccccccacacacagagcctcccagg-gaaccaga 259
Query: 59 acgcatgtgtatacacagtcaac-tttctttgtccagcaagaactactaaagatggacag 117
| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 260 aagcatgtgtatacacagtcaacttttc-ttgtccagcaagaactactaaagatggacag 318
Query: 118 accccattacaaatgtgtgatctgataatattttgttctgaggctgttg-aaaaaaaaac 176
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 319 accccattacaaatgtgtgatctgataatattttgttctgaggctgttgaaaaaaaaaac 378
Query: 177 agtctaataggcattgaagagaaaagtagaattcaaacaaagaaaatttttcttaagtgt 236
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agtctaataggcgttgaagagaaaagtagaattcaaacaaagaaaatttttcttaagtgt 438
Query: 237 ctgatggagtacaccccccatacacattagccctcagcaaaaatgaccttg 287
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctgatggagtacaccccccatacacattagccctcagcaaaaatgaccttg 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 689
Length adjustment: 9
Effective length of query: 278
Effective length of database: 680
Effective search space: 189040
Effective search space used: 189040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
