Query= MSMg01no181_l23.b1 MSMg01no181_l23.b1 CHROMAT_FILE:
MSMg01no181_l23.b1 PHD_FILE: MSMg01no181_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:17 2005
(325 letters)
>mm_chr17_62006267_62006991
Length = 725
Score = 609 bits (315), Expect = e-179
Identities = 321/323 (99%)
Strand = Plus / Minus
Query: 3 tatctgagtcttcattaggtaggaggctttcatgcccagaagggaagatgctgcagaggt 62
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 525 tatctgagtcttcattaggtaggaggctttcatgcccagaagggaggatgctgcagaggt 466
Query: 63 ggaaaaaatcaaaggctgaggagatggctgcaatttataaaaagctttgagacaaataaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggaaaaaatcaaaggctgaggagatggctgcaatttataaaaagctttgagacaaataaa 406
Query: 123 acaaaattggcaatgtgttcatggttattaaagcaactgagcctcttagtctggagtctg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acaaaattggcaatgtgttcatggttattaaagcaactgagcctcttagtctggagtctg 346
Query: 183 ccaggatcattattgagagttcccatgcgttcatcagctgtggacaagggactgcataaa 242
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 345 ccaggatcattattgagagttcccatgcgttcatcagctgtggacaaggaactgcataaa 286
Query: 243 taatcacttgttaatagcaggtacatatccagttacaataatgtgttaaggaaaagagcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 taatcacttgttaatagcaggtacatatccagttacaataatgtgttaaggaaaagagcc 226
Query: 303 atttagttttattattgaacaat 325
|||||||||||||||||||||||
Sbjct: 225 atttagttttattattgaacaat 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_l23.g1 MSMg01no181_l23.g1 CHROMAT_FILE:
MSMg01no181_l23.g1 PHD_FILE: MSMg01no181_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:17 2005
(583 letters)
>mm_chr17_61859183_61860167
Length = 985
Score = 1062 bits (549), Expect = 0.0
Identities = 576/585 (98%), Gaps = 2/585 (0%)
Strand = Plus / Plus
Query: 1 atttgcttgggactctgataaaagatctattaagtaaatattcattgcctccgttcaaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 atttgcttgggactctgataaaagatctattaagtaaatattcattgcctgagttcaaac 260
Query: 61 ttataaaaggcttaacaaatgagcttgacttctataataaagagaagagatacctgaata 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ttataaaaggcttaacaaatgagcttgacttctataataaagagaagagatacctgaaaa 320
Query: 121 gcca-agcacagacgaattaattgagtttcattaagattttgatgatattggcgtatata 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccacagcacagacgaattaattgagtttcattaagattttgatgatattggcgtatata 380
Query: 180 cttatgcaatgtggcatatgatgctcagactatcagactagtaaatggctttagtattga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttatgcaatgtggcatatgatgctcagactatcagactagtaaatggctttagtattga 440
Query: 240 ctgtggcttttggaaattaggtgattagtgatttaacagaaaatggttaaaataaaagaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtggcttttggaaattaggtgattagtgatttaacagaaaatggttaaaataaaagaa 500
Query: 300 aatggagaagaatttaagaaccagtaggggaacttctgtgcagtggccataaaagagtaa 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatggaaaagaatttaagaaccagtaggggaacttctgtgcagtggccataaaagagtaa 560
Query: 360 tacatagcactgcctttttttctcacttagaaatgtttctcattttt-aagatgaattta 418
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 tacatagtactgcctttttttctcacttagaaatgtttctcattttttaagatgaattta 620
Query: 419 gacattaaagaagtgctcaaatgttcattttgtgctctgcataagaggctttaaaaatgt 478
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 gacattaaagaagtgttcaaatgttcattttgtgctctgcataagaagctttaaaaatgt 680
Query: 479 tatttttcctagacttgaaattataggtaatctgcttgtatctccttttatccgcgtcat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatttttcctagacttgaaattataggtaatctgcttgtatctccttttatccgcgtcat 740
Query: 539 tccatgcataatcagtgcccaagtaacaaactaaagcttccttag 583
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccatgcataatcagtgcccaagtaacaaactaaagcttccttag 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 985
Length adjustment: 10
Effective length of query: 573
Effective length of database: 975
Effective search space: 558675
Effective search space used: 558675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
